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Gene: Sox21 (SRY-box transcription factor 21) Rattus norvegicus
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Symbol: Sox21
Name: SRY-box transcription factor 21
Description: Predicted to have DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in hair follicle development; positive regulation of transcription by RNA polymerase II; and stem cell differentiation. Orthologous to human SOX21 (SRY-box transcription factor 21); INTERACTS WITH bisphenol A; decabromodiphenyl ether; testosterone.
Type: protein-coding
RefSeq Status: MODEL
Also known as: LOC306168; LOW QUALITY PROTEIN: transcription factor SOX-21; SRY (sex determining region Y)-box 21; SRY box 21; SRY-box containing gene 21; transcription factor SOX-21
Orthologs:
Homo sapiens (human) : SOX21 (SRY-box transcription factor 21)  HGNC  Alliance
Mus musculus (house mouse) : Sox21 (SRY (sex determining region Y)-box 21)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Sox21 (SRY-box transcription factor 21)
Pan paniscus (bonobo/pygmy chimpanzee) : SOX21 (SRY-box transcription factor 21)
Sus scrofa (pig) : SOX21 (SRY-box transcription factor 21)
Chlorocebus sabaeus (African green monkey) : SOX21 (SRY-box transcription factor 21)
Heterocephalus glaber (naked mole-rat) : Sox21 (SRY-box transcription factor 21)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.015103,438,674 - 103,441,405 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl15103,440,212 - 103,441,030 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.015106,879,031 - 106,881,100 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.115103,137,749 - 103,215,460 (-)NCBI
Celera1594,143,028 - 94,146,136 (-)NCBICelera
Cytogenetic Map15q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Sox21
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1304724
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.