Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Pcdh17 (protocadherin 17) Rattus norvegicus
Analyze
Symbol: Pcdh17
Name: protocadherin 17
Description: Predicted to have calcium ion binding activity. Predicted to be involved in several processes, including negative regulation of synaptic transmission; regulation of synaptic vesicle clustering; and synapse organization. Predicted to localize to GABA-ergic synapse; glutamatergic synapse; and integral component of synaptic membrane. Orthologous to human PCDH17 (protocadherin 17); INTERACTS WITH 1-naphthyl isothiocyanate; 17alpha-ethynylestradiol; 2,2',4,4'-Tetrabromodiphenyl ether.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC306055; protocadherin-17
Orthologs:
Homo sapiens (human) : PCDH17 (protocadherin 17)  HGNC  Alliance
Mus musculus (house mouse) : Pcdh17 (protocadherin 17)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Pcdh17 (protocadherin 17)
Pan paniscus (bonobo/pygmy chimpanzee) : PCDH17 (protocadherin 17)
Canis lupus familiaris (dog) : PCDH17 (protocadherin 17)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Pcdh17 (protocadherin 17)
Sus scrofa (pig) : PCDH17 (protocadherin 17)
Chlorocebus sabaeus (African green monkey) : PCDH17 (protocadherin 17)
Heterocephalus glaber (naked mole-rat) : Pcdh17 (protocadherin 17)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01567,555,835 - 67,647,990 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1567,555,835 - 67,645,088 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01571,182,073 - 71,273,939 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41566,391,901 - 66,482,530 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11566,405,272 - 66,600,882 (+)NCBI
Celera1559,754,674 - 59,843,809 (+)NCBICelera
Cytogenetic Map15q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Pcdh17
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1304753
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2020-06-09
Status: ACTIVE



NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.