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Gene: Vps39 (VPS39 subunit of HOPS complex) Rattus norvegicus
Symbol: Vps39
Name: VPS39 subunit of HOPS complex
Description: Predicted to be involved in several processes, including autophagy; endosomal vesicle fusion; and lysosomal transport. Predicted to colocalize with the AP-3 adaptor complex. Orthologous to human VPS39 (VPS39 subunit of HOPS complex); INTERACTS WITH bisphenol A; quercetin; vinclozolin.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: LOC362199; vacuolar protein sorting 39; vacuolar protein sorting 39 (yeast); vacuolar protein sorting 39 homolog; vacuolar protein sorting 39 homolog (S. cerevisiae); Vam6; VPS39 HOPS complex subunit
Homo sapiens (human) : VPS39 (VPS39 subunit of HOPS complex)  HGNC  Alliance
Mus musculus (house mouse) : Vps39 (VPS39 HOPS complex subunit)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Vps39 (VPS39 subunit of HOPS complex)
Pan paniscus (bonobo/pygmy chimpanzee) : VPS39 (VPS39 subunit of HOPS complex)
Canis lupus familiaris (dog) : VPS39 (VPS39 subunit of HOPS complex)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Vps39 (VPS39 subunit of HOPS complex)
Sus scrofa (pig) : VPS39 (VPS39 subunit of HOPS complex)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Rat AssemblyChrPosition (strand)SourceGenome Browsers
Rnor_6.03112,087,213 - 112,125,307 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.03118,634,996 - 118,673,028 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43106,803,136 - 106,842,405 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.13106,699,565 - 106,738,812 (-)NCBI
Celera3106,175,713 - 106,213,173 (-)NCBICelera
Cytogenetic Map3q35NCBI
JBrowse: View Region in Genome Browser (JBrowse)

Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated


Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status


Nucleotide Sequences
Protein Sequences

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
More on Vps39
Alliance Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1304858
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE


RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.