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Gene: Vps39 (VPS39 subunit of HOPS complex) Rattus norvegicus
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Symbol: Vps39
Name: VPS39 subunit of HOPS complex
Description: Predicted to be involved in several processes, including autophagy; endosomal vesicle fusion; and lysosomal transport. Predicted to colocalize with the AP-3 adaptor complex. Orthologous to human VPS39 (VPS39 subunit of HOPS complex); INTERACTS WITH bisphenol A; quercetin; vinclozolin.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: LOC362199; vacuolar protein sorting 39; vacuolar protein sorting 39 (yeast); vacuolar protein sorting 39 homolog; vacuolar protein sorting 39 homolog (S. cerevisiae); Vam6; VPS39 HOPS complex subunit
Orthologs:
Homo sapiens (human) : VPS39 (VPS39 subunit of HOPS complex)  HGNC  Alliance
Mus musculus (house mouse) : Vps39 (VPS39 HOPS complex subunit)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Vps39 (VPS39 subunit of HOPS complex)
Pan paniscus (bonobo/pygmy chimpanzee) : VPS39 (VPS39 subunit of HOPS complex)
Canis lupus familiaris (dog) : VPS39 (VPS39 subunit of HOPS complex)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Vps39 (VPS39 subunit of HOPS complex)
Sus scrofa (pig) : VPS39 (VPS39 subunit of HOPS complex)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.03112,087,213 - 112,125,307 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.03118,634,996 - 118,673,028 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43106,803,136 - 106,842,405 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.13106,699,565 - 106,738,812 (-)NCBI
Celera3106,175,713 - 106,213,173 (-)NCBICelera
Cytogenetic Map3q35NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Vps39
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1304858
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.