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Gene: Tfap2d (transcription factor AP-2 delta) Rattus norvegicus
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Symbol: Tfap2d
Name: transcription factor AP-2 delta
CRRD ID: 1304864
Description: Predicted to have DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in several processes, including inferior colliculus development; negative regulation of neuron apoptotic process; and positive regulation of transcription by RNA polymerase II. Predicted to localize to nucleus and transcription regulator complex. Orthologous to human TFAP2D (transcription factor AP-2 delta); INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC301284; Tcfap2d; transcription factor AP-2, delta; transcription factor AP-2-delta
Orthologs:
Homo sapiens (human) : TFAP2D (transcription factor AP-2 delta)  HGNC  Alliance
Mus musculus (house mouse) : Tfap2d (transcription factor AP-2, delta)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Tfap2d (transcription factor AP-2 delta)
Pan paniscus (bonobo/pygmy chimpanzee) : TFAP2D (transcription factor AP-2 delta)
Canis lupus familiaris (dog) : TFAP2D (transcription factor AP-2 delta)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Tfap2d (transcription factor AP-2 delta)
Sus scrofa (pig) : TFAP2D (transcription factor AP-2 delta)
Chlorocebus sabaeus (African green monkey) : TFAP2D (transcription factor AP-2 delta)
Heterocephalus glaber (naked mole-rat) : Tfap2d (transcription factor AP-2 delta)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0925,304,876 - 25,365,151 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl925,304,876 - 25,365,151 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0924,167,386 - 24,227,643 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4917,936,724 - 18,006,941 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1917,933,765 - 18,004,235 (+)NCBI
Celera919,269,921 - 19,328,727 (+)NCBICelera
Cytogenetic Map9q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References - curated
References - uncurated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Tfap2d
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1304864
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.