Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Tmem54 (transmembrane protein 54) Rattus norvegicus
Analyze
Symbol: Tmem54
Name: transmembrane protein 54
Description: Predicted to localize to integral component of membrane. Orthologous to human TMEM54 (transmembrane protein 54); INTERACTS WITH acrylamide; bisphenol A; thioacetamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: beta-casein-like protein; LOC362605; MGC124700; RGD1304886; similar to beta-casein-like protein
Orthologs:
Homo sapiens (human) : TMEM54 (transmembrane protein 54)  HGNC  Alliance
Mus musculus (house mouse) : Tmem54 (transmembrane protein 54)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Tmem54 (transmembrane protein 54)
Pan paniscus (bonobo/pygmy chimpanzee) : TMEM54 (transmembrane protein 54)
Canis lupus familiaris (dog) : TMEM54 (transmembrane protein 54)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Tmem54 (transmembrane protein 54)
Sus scrofa (pig) : TMEM54 (transmembrane protein 54)
Chlorocebus sabaeus (African green monkey) : TMEM54 (transmembrane protein 54)
Heterocephalus glaber (naked mole-rat) : Tmem54 (transmembrane protein 54)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.05147,288,700 - 147,295,191 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5147,288,723 - 147,296,702 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05151,023,461 - 151,029,952 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45148,261,422 - 148,267,913 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.15148,271,435 - 148,277,927 (+)NCBI
Celera5139,929,148 - 139,935,638 (+)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Tmem54
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1304886
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-11-27
Status: ACTIVE



NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.