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Gene: Clca2 (chloride channel accessory 2) Rattus norvegicus
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Symbol: Clca2
Name: chloride channel accessory 2
Description: Predicted to have intracellular calcium activated chloride channel activity and ligand-gated ion channel activity. Predicted to be involved in chloride transport. Predicted to localize to several cellular components, including the cell junction; integral component of plasma membrane; and nucleus. Orthologous to human CLCA2 (chloride channel accessory 2); INTERACTS WITH 17beta-estradiol; 2,5-hexanedione; ammonium chloride.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: calcium-activated chloride channel regulator 2; chloride channel calcium activated 5; chloride channel, calcium activated, family member 2; Clca5; LOC308016
Orthologs:
Homo sapiens (human) : CLCA2 (chloride channel accessory 2)  HGNC  Alliance
Mus musculus (house mouse) : Clca2 (chloride channel accessory 2)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Clca2 (chloride channel accessory 2)
Pan paniscus (bonobo/pygmy chimpanzee) : CLCA2 (chloride channel accessory 2)
Canis lupus familiaris (dog) : CLCA2 (chloride channel accessory 2)
Sus scrofa (pig) : CLCA2 (chloride channel accessory 2)
Chlorocebus sabaeus (African green monkey) : CLCA2 (chloride channel accessory 2)
Heterocephalus glaber (naked mole-rat) : Clca2 (chloride channel accessory 2)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.02250,954,423 - 250,981,544 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2250,954,397 - 250,981,623 (-)Ensembl
Rnor_5.02269,482,241 - 269,509,237 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42243,114,775 - 243,142,349 (-)NCBIRGSC3.4rn4RGSC3.4
Celera2225,983,314 - 226,010,397 (-)NCBICelera
Cytogenetic Map2q44NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Clca2
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1304894
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2020-01-21
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.