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Gene: Rubcnl (rubicon like autophagy enhancer) Rattus norvegicus
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Symbol: Rubcnl
Name: rubicon like autophagy enhancer
Description: Predicted to have phosphatidylinositol-3-phosphate binding activity; phosphatidylinositol-4-phosphate binding activity; and phosphatidylinositol-5-phosphate binding activity. Predicted to be involved in macroautophagy; regulation of glycogen metabolic process; and regulation of lipid metabolic process. Predicted to localize to autophagosome membrane. Orthologous to human RUBCNL (rubicon like autophagy enhancer); INTERACTS WITH bisphenol A; endosulfan; 17alpha-ethynylestradiol (ortholog).
Type: protein-coding
RefSeq Status: MODEL
Also known as: LOC290403; RGD1304929; rubicon like autophagy regulator; RUN and cysteine rich domain containing beclin 1 interacting protein like; similar to chromosome 13 open reading frame 18; uncharacterized protein KIAA0226-like homolog
Orthologs:
Homo sapiens (human) : RUBCNL (rubicon like autophagy enhancer)  HGNC  Alliance
Mus musculus (house mouse) : Rubcnl (RUN and cysteine rich domain containing beclin 1 interacting protein like)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Rubcnl (rubicon like autophagy enhancer)
Pan paniscus (bonobo/pygmy chimpanzee) : RUBCNL (rubicon like autophagy enhancer)
Canis lupus familiaris (dog) : RUBCNL (rubicon like autophagy enhancer)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Rubcnl (rubicon like autophagy enhancer)
Sus scrofa (pig) : RUBCNL (rubicon like autophagy enhancer)
Chlorocebus sabaeus (African green monkey) : RUBCNL (rubicon like autophagy enhancer)
Heterocephalus glaber (naked mole-rat) : Rubcnl (rubicon like autophagy enhancer)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01557,065,512 - 57,109,197 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1557,065,428 - 57,102,599 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01560,777,541 - 60,821,362 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41555,894,968 - 55,913,448 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11555,815,486 - 55,929,226 (+)NCBI
Celera1549,964,999 - 50,008,655 (+)NCBICelera
Cytogenetic Map15q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Rubcnl
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1304929
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2020-03-04
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.