Gene: Six5 (SIX homeobox 5) Rattus norvegicus
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Symbol: Six5
Name: SIX homeobox 5
Description: Predicted to have RNA polymerase II proximal promoter sequence-specific DNA binding activity; predicted to be involved in several processes, including lens development in camera-type eye, negative regulation of skeletal muscle satellite cell proliferation, and regulation of cellular biosynthetic process; predicted to localize to the nucleus; orthologous to human SIX5 (SIX homeobox 5); INTERACTS WITH 2,4-dinitrotoluene; bis(2-ethylhexyl) phthalate; bisphenol A.
Type: protein-coding
RefSeq Status: MODEL
Also known as: homeobox protein SIX5; LOC308406; sine oculis-related homeobox 5 homolog; sine oculis-related homeobox 5 homolog (Drosophila)
Orthologs:
Homo sapiens (human) : SIX5 (SIX homeobox 5)  HGNC  Alliance
Mus musculus (house mouse) : Six5 (sine oculis-related homeobox 5)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Six5 (SIX homeobox 5)
Pan paniscus (bonobo/pygmy chimpanzee) : SIX5 (SIX homeobox 5)
Canis lupus familiaris (dog) : SIX5 (SIX homeobox 5)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Six5 (SIX homeobox 5)
Sus scrofa (pig) : SIX5 (SIX homeobox 5)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0180,000,106 - 80,005,303 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0181,267,384 - 81,272,239 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4178,452,076 - 78,455,873 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1178,530,033 - 78,533,385 (+)NCBI
Celera173,207,002 - 73,212,199 (+)NCBICelera
Cytogenetic Map1q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
 
More on Six5
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1305040
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.