Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Usb1 (U6 snRNA biogenesis phosphodiesterase 1) Rattus norvegicus
Analyze
Symbol: Usb1
Name: U6 snRNA biogenesis phosphodiesterase 1
Description: Predicted to have 3'-5'-exoribonuclease activity. Predicted to be involved in RNA splicing and U6 snRNA 3'-end processing. Predicted to localize to intercellular bridge and nucleoplasm. Human ortholog(s) of this gene implicated in poikiloderma with neutropenia. Orthologous to human USB1 (U6 snRNA biogenesis phosphodiesterase 1); INTERACTS WITH bisphenol A; antirheumatic drug (ortholog); benzo[a]pyrene (ortholog).
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: hypothetical protein LOC307643; LOC307643; putative U6 snRNA phosphodiesterase; RGD1305215; similar to expressed sequence AA960436; U6 snRNA biogenesis 1; U6 snRNA phosphodiesterase; UPF0406 protein C16orf57 homolog
Orthologs:
Homo sapiens (human) : USB1 (U6 snRNA biogenesis phosphodiesterase 1)  HGNC  Alliance
Mus musculus (house mouse) : Usb1 (U6 snRNA biogenesis 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Usb1 (U6 snRNA biogenesis phosphodiesterase 1)
Pan paniscus (bonobo/pygmy chimpanzee) : USB1 (U6 snRNA biogenesis phosphodiesterase 1)
Canis lupus familiaris (dog) : USB1 (U6 snRNA biogenesis phosphodiesterase 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Usb1 (U6 snRNA biogenesis phosphodiesterase 1)
Sus scrofa (pig) : USB1 (U6 snRNA biogenesis phosphodiesterase 1)
Chlorocebus sabaeus (African green monkey) : USB1 (U6 snRNA biogenesis phosphodiesterase 1)
Heterocephalus glaber (naked mole-rat) : Usb1 (U6 snRNA biogenesis phosphodiesterase 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01910,105,750 - 10,118,701 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1910,105,701 - 10,119,128 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01910,089,670 - 10,102,534 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41910,148,223 - 10,162,086 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11910,153,050 - 10,166,912 (-)NCBI
Celera199,582,087 - 9,595,145 (-)NCBICelera
Cytogenetic Map19p13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Usb1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1305215
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2020-06-09
Status: ACTIVE



NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.