Gene: Havcr2 (hepatitis A virus cellular receptor 2) Rattus norvegicus
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Symbol: Havcr2
Name: hepatitis A virus cellular receptor 2
Description: Predicted to have metal ion binding activity; predicted to be involved in several processes, including negative regulation of cytokine production, regulation of defense response, and regulation of leukocyte activation; localizes to the cell surface; biomarker of transient cerebral ischemia; orthologous to human HAVCR2 (hepatitis A virus cellular receptor 2); INTERACTS WITH (RS)-amphetamine; 2,4-dinitrotoluene; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: HAVcr-2; hepatitis A virus cellular receptor 2 homolog; LOC363578; T cell immunoglobulin mucin-3; T-cell immunoglobulin and mucin domain-containing protein 3; T-cell immunoglobulin mucin receptor 3; T-cell membrane protein 3; TIM-3; tim3; TIMD-3
Orthologs:
Homo sapiens (human) : HAVCR2 (hepatitis A virus cellular receptor 2)  HGNC  Alliance
Mus musculus (house mouse) : Havcr2 (hepatitis A virus cellular receptor 2)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Havcr2 (hepatitis A virus cellular receptor 2)
Pan paniscus (bonobo/pygmy chimpanzee) : HAVCR2 (hepatitis A virus cellular receptor 2)
Canis lupus familiaris (dog) : HAVCR2 (hepatitis A virus cellular receptor 2)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Havcr2 (hepatitis A virus cellular receptor 2)
Sus scrofa (pig) : HAVCR2 (hepatitis A virus cellular receptor 2)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01031,561,838 - 31,590,624 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01031,376,989 - 31,404,231 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41031,585,703 - 31,610,825 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11031,579,175 - 31,610,030 (+)NCBI
Celera1030,333,452 - 30,358,912 (+)NCBICelera
Cytogenetic Map10q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Havcr2
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1305233
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.