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Gene: Prdm9 (PR/SET domain 9) Rattus norvegicus
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Symbol: Prdm9
Name: PR/SET domain 9
Description: Predicted to have DNA binding activity; DNA-binding transcription factor activity; and histone methyltransferase activity (H3-K4 specific). Predicted to be involved in several processes, including chromatin organization; meiotic gene conversion; and positive regulation of nucleobase-containing compound metabolic process. Predicted to localize to the nucleus. Orthologous to several human genes including PRDM9 (PR/SET domain 9); PARTICIPATES IN histone modification pathway; INTERACTS WITH (RS)-amphetamine; 1-naphthyl isothiocyanate; 17beta-estradiol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: histone-lysine N-methyltransferase PRDM9; LOC365155; PR domain 9; PR domain containing 7; PR domain containing 9; PR domain zinc finger protein 9; PR domain-containing protein 9; Prdm7
Orthologs:
Homo sapiens (human) : PRDM9 (PR/SET domain 9)  HGNC  Alliance
Mus musculus (house mouse) : Prdm9 (PR domain containing 9)  MGI  Alliance
Pan paniscus (bonobo/pygmy chimpanzee) : PRDM9 (PR/SET domain 9)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0157,533,602 - 57,555,155 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0158,463,710 - 58,484,066 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4154,444,598 - 54,452,679 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1154,435,819 - 54,455,624 (-)NCBI
Celera152,710,859 - 52,730,930 (-)NCBICelera
Cytogenetic Map1q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Prdm9
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1305247
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.