Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Clcn6 (chloride voltage-gated channel 6) Rattus norvegicus
Analyze
Symbol: Clcn6
Name: chloride voltage-gated channel 6
Description: Predicted to have chloride transmembrane transporter activity. Involved in response to mechanical stimulus. Predicted to localize to the intracellular membrane-bounded organelle. Human ortholog(s) of this gene implicated in coronary artery disease. Orthologous to human CLCN6 (chloride voltage-gated channel 6); INTERACTS WITH 1-naphthyl isothiocyanate; 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: chloride channel 6; chloride channel, voltage-sensitive 6; chloride transport protein 6; LOC295586
Orthologs:
Homo sapiens (human) : CLCN6 (chloride voltage-gated channel 6)  HGNC  Alliance
Mus musculus (house mouse) : Clcn6 (chloride channel, voltage-sensitive 6)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Clcn6 (chloride voltage-gated channel 6)
Pan paniscus (bonobo/pygmy chimpanzee) : CLCN6 (chloride voltage-gated channel 6)
Canis lupus familiaris (dog) : CLCN6 (chloride voltage-gated channel 6)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Clcn6 (chloride voltage-gated channel 6)
Sus scrofa (pig) : CLCN6 (chloride voltage-gated channel 6)
Chlorocebus sabaeus (green monkey) : CLCN6 (chloride voltage-gated channel 6)
Heterocephalus glaber (naked mole-rat) : Clcn6 (chloride voltage-gated channel 6)
more info ...
Allele / Splice: Clcn6em2Mcwi  
Genetic Models: SS-Clcn6em2Mcwi
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.05164,811,815 - 164,844,554 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5164,811,816 - 164,844,586 (-)Ensembl
Rnor_5.05168,469,718 - 168,502,323 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45165,079,773 - 165,110,594 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.15165,090,327 - 165,120,752 (-)NCBI
Celera5156,716,141 - 156,746,803 (-)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Phenotype Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
Genetic Models
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Clcn6
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1305379
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-11-27
Status: ACTIVE



NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.