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Gene: Kdm5a (lysine demethylase 5A) Rattus norvegicus
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Symbol: Kdm5a
Name: lysine demethylase 5A
Description: Predicted to have several functions, including DNA binding activity; DNA-binding transcription factor activity; and histone demethylase activity (H3-K4 specific). Involved in histone H3-K4 demethylation; male gonad development; and spermatogenesis. Predicted to localize to the histone methyltransferase complex and protein-DNA complex. Biomarker of cryptorchidism. Human ortholog(s) of this gene implicated in ankylosing spondylitis. Orthologous to human KDM5A (lysine demethylase 5A); PARTICIPATES IN histone modification pathway; INTERACTS WITH acrylamide; bisphenol A; chloroprene.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: Jarid1a; jumonji, AT rich interactive domain 1A (Rbp2 like); LOC297563; lysine (K)-specific demethylase 5A; lysine-specific demethylase 5A; MGC189432
Orthologs:
Homo sapiens (human) : KDM5A (lysine demethylase 5A)  HGNC  Alliance
Mus musculus (house mouse) : Kdm5a (lysine (K)-specific demethylase 5A)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Kdm5a (lysine demethylase 5A)
Pan paniscus (bonobo/pygmy chimpanzee) : KDM5A (lysine demethylase 5A)
Canis lupus familiaris (dog) : KDM5A (lysine demethylase 5A)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Kdm5a (lysine demethylase 5A)
Sus scrofa (pig) : KDM5A (lysine demethylase 5A)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.04152,892,388 - 152,972,196 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.04219,981,483 - 220,059,803 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44156,736,343 - 156,811,991 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.14156,985,211 - 156,990,428 (+)NCBI
Celera4142,417,987 - 142,495,287 (+)NCBICelera
Cytogenetic Map4q42NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Kdm5a
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1305429
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.