Imported Annotations - CTD | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Gaucher's disease | ISO | RGD:1313797 | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:17464953 |
Imported Annotations - OMIM




![]() |
Create Name: | |
Description: |
![]() |
Save what matters to you |
{{ loginError }} |
Sign in with your RGD account |
Create New Account | Recover Password |
Analyze GeneStrainQTL List |
![]() Gene Annotator (Functional Annotation) unavailable |
![]() Gene Annotator (Annotation Distribution) unavailable |
![]() Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable |
Gene Annotator (Functional Annotation) |
Gene Annotator (Annotation Distribution) |
Variant Visualizer (Genomic Variants) |
![]() InterViewer (Protein-Protein Interactions) unavailable |
![]() Gviewer (Genome Viewer) unavailable |
![]() Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable |
InterViewer (Protein-Protein Interactions) |
GViewer (Genome Viewer) |
Variant Visualizer (Damaging Variants) |
![]() Gene Annotator (Annotation Comparison) unavailable |
![]() OLGA (Gene List Generator) unavailable |
![]() |
Gene Annotator (Annotation Comparison) |
OLGA (Gene List Generator) |
Excel (Download) |
![]() MOET (Multi-Ontology Enrichement) unavailable |
![]() GOLF (Gene-Ortholog Location Finder) unavailable |
|
MOET (Multi-Ontology Enrichement) |
GOLF (Gene-Ortholog Location Finder) |
Imported Annotations - CTD | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Gaucher's disease | ISO | RGD:1313797 | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:17464953 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1. | Flister MJ, etal., Hypertension. 2013 Apr;61(4):850-6. doi: 10.1161/HYPERTENSIONAHA.111.01008. Epub 2013 Mar 4. |
2. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
3. | GOA data from the GO Consortium |
4. | MGD data from the GO Consortium |
5. | OMIM Disease Annotation Pipeline |
6. | Pipeline to import KEGG annotations from KEGG into RGD |
7. | Pipeline to import SMPDB annotations from SMPDB into RGD |
8. | RGD automated data pipeline |
9. | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
10. | RGD automated import pipeline for gene-chemical interactions |
Chit1 (Rattus norvegicus - Norway rat) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
CHIT1 (Homo sapiens - human) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Chit1 (Mus musculus - house mouse) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Chit1 (Chinchilla lanigera - long-tailed chinchilla) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
CHIT1 (Pan paniscus - bonobo/pygmy chimpanzee) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Chit1 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
CHIT1 (Sus scrofa - pig) |
|
AW531798 |
|
The following QTLs overlap with this region. | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer | ![]() | Gviewer |
The detailed report is available here: | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
testis | heart | brain | ovary | uterus | skeletal muscle tissue | colon | gastrocnemius | forebrain | hindbrain | lung | spleen | liver | kidney | adrenal gland | thymus | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
High | ||||||||||||||||
Medium | 6 | 11 | 5 | |||||||||||||
Low | 16 | 35 | 19 | 15 | 4 | 3 | 3 | 8 | 20 | 20 | 6 | 29 | 35 | 8 | 8 | |
Below cutoff | 8 | 4 | 6 | 5 | 8 |
RefSeq Transcripts | NM_001079689 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
NM_001270846 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
NM_001270847 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
NM_001270848 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_008769542 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_017598698 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | AABR07020988 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
AAHX01075167 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AC117152 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CH473958 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
DQ286232 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
DQ923316 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
DQ923317 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
DQ923318 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
DQ923319 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
DQ923320 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | NM_001079689 ⟹ NP_001073157 | ||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||
Position: |
|
||||||||||||||||||||||||
Sequence: |
GGACACCACTGAGGTGGCCATGGTAAGAAGCTGTATCAGGCAGGGTCTGATTAAAGTGTCTCAAhide sequence |
RefSeq Acc Id: | NM_001270846 ⟹ NP_001257775 | |||||||||||||||||||
RefSeq Status: | VALIDATED | |||||||||||||||||||
Type: | CODING | |||||||||||||||||||
Position: |
|
|||||||||||||||||||
Sequence: |
GGACACCACTGAGGTGGCCATGGAAAGCAGAGTCACAGGGCACCATGCGCTCCTCAACCAACTThide sequence |
RefSeq Acc Id: | NM_001270847 ⟹ NP_001257776 | |||||||||||||||||||
RefSeq Status: | VALIDATED | |||||||||||||||||||
Type: | CODING | |||||||||||||||||||
Position: |
|
|||||||||||||||||||
Sequence: |
GGACACCACTGAGGTGGCCATGGTATCCATTTCAACATTTCTGGCTGTGTGGCAGCAGGCCAGChide sequence |
RefSeq Acc Id: | NM_001270848 ⟹ NP_001257777 | |||||||||||||||||||
RefSeq Status: | VALIDATED | |||||||||||||||||||
Type: | CODING | |||||||||||||||||||
Position: |
|
|||||||||||||||||||
Sequence: |
GCAGTTGGAACAACTTGTAGAGCTCTCAGCAACTTCTCCAACACCAAGTCGGCCTGGATGCTGChide sequence |
RefSeq Acc Id: | XM_008769542 ⟹ XP_008767764 | |||||||||
RefSeq Status: | ||||||||||
Type: | CODING | |||||||||
Position: |
|
|||||||||
Sequence: |
GAAAGCAGAGTCACAGGGCACCATGCGCTCCTCAACCAACTTCTGAAGGACCTTCAAGGGAGCThide sequence |
RefSeq Acc Id: | XM_017598698 ⟹ XP_017454187 | |||||||||
RefSeq Status: | ||||||||||
Type: | CODING | |||||||||
Position: |
|
|||||||||
Sequence: |
AGCTCTGCAGTCAGGCGCCATTGTCAGGTCTTTTTGGTGACCCAAAGCTACCAGTCATTCCATChide sequence |
Protein RefSeqs | NP_001073157 | (Get FASTA) | NCBI Sequence Viewer |
NP_001257775 | (Get FASTA) | NCBI Sequence Viewer | |
NP_001257776 | (Get FASTA) | NCBI Sequence Viewer | |
NP_001257777 | (Get FASTA) | NCBI Sequence Viewer | |
XP_008767764 | (Get FASTA) | NCBI Sequence Viewer | |
XP_017454187 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | ABB89471 | (Get FASTA) | NCBI Sequence Viewer |
ABL06995 | (Get FASTA) | NCBI Sequence Viewer | |
ABL06996 | (Get FASTA) | NCBI Sequence Viewer | |
ABL06997 | (Get FASTA) | NCBI Sequence Viewer | |
ABL06998 | (Get FASTA) | NCBI Sequence Viewer | |
ABL06999 | (Get FASTA) | NCBI Sequence Viewer | |
EDM09742 | (Get FASTA) | NCBI Sequence Viewer | |
EDM09743 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | NP_001073157 ⟸ NM_001079689 |
- Peptide Label: | precursor |
- UniProtKB: | A0S5V8 (UniProtKB/TrEMBL) |
- Sequence: |
MVQSLALAGVTTLLMIQWGSAAKLFCYFTNWAQYRSGAARFLPRDVDPNLCTHVIYAFAGLNNHhide sequence |
RefSeq Acc Id: | NP_001257777 ⟸ NM_001270848 |
- Peptide Label: | precursor |
- UniProtKB: | A0S5V8 (UniProtKB/TrEMBL) |
- Sequence: |
MVQSLALAGVTTLLMIQWGSAAKLFCYFTNWAQYRSGAARFLPRDVDPNLCTHVIYAFAGLNNHhide sequence |
RefSeq Acc Id: | NP_001257775 ⟸ NM_001270846 |
- Peptide Label: | precursor |
- UniProtKB: | A0S5V8 (UniProtKB/TrEMBL) |
- Sequence: |
MVQSLALAGVTTLLMIQWGSAAKLFCYFTNWAQYRSGAARFLPRDVDPNLCTHVIYAFAGLNNHhide sequence |
RefSeq Acc Id: | NP_001257776 ⟸ NM_001270847 |
- Peptide Label: | precursor |
- UniProtKB: | A0S5V8 (UniProtKB/TrEMBL) |
- Sequence: |
MVQSLALAGVTTLLMIQWGSAAKLFCYFTNWAQYRSGAARFLPRDVDPNLCTHVIYAFAGLNNHhide sequence |
RefSeq Acc Id: | XP_008767764 ⟸ XM_008769542 |
- Peptide Label: | isoform X2 |
- Sequence: |
MVQSLALAGSAAKLFCYFTNWAQYRSGAARFLPRDVDPNLCTHVIYAFAGLNNHQVSTVEPNDEhide sequence |
RefSeq Acc Id: | XP_017454187 ⟸ XM_017598698 |
- Peptide Label: | isoform X1 |
- UniProtKB: | A0S5V8 (UniProtKB/TrEMBL) |
- Sequence: |
MVQSLALAGVTTLLMIQWGSAAKLFCYFTNWAQYRSGAARFLPRDVDPNLCTHVIYAFAGLNNHhide sequence |
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
Database | Acc Id | Source(s) |
AGR Gene | RGD:1305646 | AgrOrtholog |
Ensembl Genes | ENSRNOG00000028072 | ENTREZGENE, UniProtKB/TrEMBL |
Ensembl Protein | ENSRNOP00000036477 | ENTREZGENE, UniProtKB/TrEMBL |
ENSRNOP00000070204 | ENTREZGENE, UniProtKB/TrEMBL | |
Ensembl Transcript | ENSRNOT00000035658 | ENTREZGENE, UniProtKB/TrEMBL |
ENSRNOT00000080768 | ENTREZGENE, UniProtKB/TrEMBL | |
Gene3D-CATH | 3.10.50.10 | UniProtKB/TrEMBL |
InterPro | Chitin-bd_dom_sf | UniProtKB/TrEMBL |
Chitin-bd_peritrophin-A | UniProtKB/TrEMBL | |
Chitinase_II | UniProtKB/TrEMBL | |
Chitinase_insertion | UniProtKB/TrEMBL | |
Glyco_hydro18cat | UniProtKB/TrEMBL | |
Glyco_hydro_18_chit_AS | UniProtKB/TrEMBL | |
Glyco_hydro_catalytic_core | UniProtKB/TrEMBL | |
KEGG Report | rno:289032 | UniProtKB/TrEMBL |
NCBI Gene | 289032 | ENTREZGENE |
Pfam | CBM_14 | UniProtKB/TrEMBL |
Glyco_hydro_18 | UniProtKB/TrEMBL | |
PhenoGen | Chit1 | PhenoGen |
PROSITE | CHIT_BIND_II | UniProtKB/TrEMBL |
CHITINASE_18 | UniProtKB/TrEMBL | |
SMART | Glyco_18 | UniProtKB/TrEMBL |
Superfamily-SCOP | Chitin_bind_PerA | UniProtKB/TrEMBL |
Glyco_hydro_cat | UniProtKB/TrEMBL | |
SSF54556 | UniProtKB/TrEMBL | |
UniGene | Rn.47819 | ENTREZGENE |
UniProt | A0S5V8 | ENTREZGENE, UniProtKB/TrEMBL |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
---|---|---|---|---|---|---|---|
2015-12-09 | Chit1 | chitinase 1 | Chit1 | chitinase 1 (chitotriosidase) | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2008-04-30 | Chit1 | chitinase 1 (chitotriosidase) | Chit1_predicted | chitinase 1 (chitotriosidase) (predicted) | 'predicted' is removed | 2292626 | APPROVED |
2005-01-12 | Chit1_predicted | chitinase 1 (chitotriosidase) (predicted) | Symbol and Name status set to approved | 70820 | APPROVED |
![]() |
More on Chit1 | |
![]() |
Alliance Gene |
![]() |
NCBI Gene |
![]() |
Ensembl Gene |
![]() |
JBrowse: rn5 rn6 |
![]() |
NCBI Genome Data Viewer |
CRRD Object Information | |
CRRD ID: | 1305646 |
Created: | 2005-01-12 |
Species: | Rattus norvegicus |
Last Modified: | 2019-11-27 |
Status: | ACTIVE |
![]() |
![]() |
![]() |
![]() |
RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.