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Analyze GeneStrainQTL List |
 Gene Annotator (Functional Annotation) unavailable |
 Gene Annotator (Annotation Distribution) unavailable |
 Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable |
Gene Annotator (Functional Annotation) |
Gene Annotator (Annotation Distribution) |
Variant Visualizer (Genomic Variants) |
 InterViewer (Protein-Protein Interactions) unavailable |
 Gviewer (Genome Viewer) unavailable |
 Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable |
InterViewer (Protein-Protein Interactions) |
GViewer (Genome Viewer) |
Variant Visualizer (Damaging Variants) |
 Gene Annotator (Annotation Comparison) unavailable |
 OLGA (Gene List Generator) unavailable |
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Gene Annotator (Annotation Comparison) |
OLGA (Gene List Generator) |
Excel (Download) |
 MOET (Multi-Ontology Enrichement) unavailable |
 GOLF (Gene-Ortholog Location Finder) unavailable |
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MOET (Multi-Ontology Enrichement) |
GOLF (Gene-Ortholog Location Finder) |
Imported Annotations - CTD | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Gaucher's disease | ISO | RGD:1313797 | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:17464953 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Gene-Chemical Interaction AnnotationsGene Ontology AnnotationsMolecular Pathway AnnotationsPhenotype AnnotationsDisease Annotations
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Gene-Chemical Interaction Annotations
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Gene Ontology Annotations
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Molecular Pathway Annotations
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Phenotype Annotations
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References - curated| 1. | Flister MJ, etal., Hypertension. 2013 Apr;61(4):850-6. doi: 10.1161/HYPERTENSIONAHA.111.01008. Epub 2013 Mar 4. |
| 2. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
| 3. | GOA data from the GO Consortium |
| 4. | MGD data from the GO Consortium |
| 5. | OMIM Disease Annotation Pipeline |
| 6. | Pipeline to import KEGG annotations from KEGG into RGD |
| 7. | Pipeline to import SMPDB annotations from SMPDB into RGD |
| 8. | RGD automated data pipeline |
| 9. | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
| 10. | RGD automated import pipeline for gene-chemical interactions |
References - uncuratedCandidate Gene StatusComparative Map Data| Chit1 (Rattus norvegicus - Norway rat) |
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| CHIT1 (Homo sapiens - human) |
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| Chit1 (Mus musculus - house mouse) |
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| Chit1 (Chinchilla lanigera - long-tailed chinchilla) |
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| CHIT1 (Pan paniscus - bonobo/pygmy chimpanzee) |
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| Chit1 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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| CHIT1 (Sus scrofa - pig) |
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Position Markers| AW531798 |
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QTLs in Region (Rnor_6.0)| The following QTLs overlap with this region. |  | Full Report | | CSV | | TAB | | Printer | | Gviewer |
miRNA Target Status
| The detailed report is available here: | | Full Report | | CSV | | TAB | | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
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RNA-SEQ Expression| testis | heart | brain | ovary | uterus | skeletal muscle tissue | colon | gastrocnemius | forebrain | hindbrain | lung | spleen | liver | kidney | adrenal gland | thymus | |
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| High | ||||||||||||||||
| Medium | 6 | 11 | 5 | |||||||||||||
| Low | 16 | 35 | 19 | 15 | 4 | 3 | 3 | 8 | 20 | 20 | 6 | 29 | 35 | 8 | 8 | |
| Below cutoff | 8 | 4 | 6 | 5 | 8 |
Nucleotide Sequences| RefSeq Transcripts | NM_001079689 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| NM_001270846 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| NM_001270847 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| NM_001270848 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_008769542 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017598698 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| GenBank Nucleotide | AABR07020988 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| AAHX01075167 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AC117152 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| CH473958 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| DQ286232 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| DQ923316 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| DQ923317 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| DQ923318 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| DQ923319 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| DQ923320 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| RefSeq Acc Id: | NM_001079689 ⟹ NP_001073157 | ||||||||||||||||||||||||
| RefSeq Status: | VALIDATED | ||||||||||||||||||||||||
| Type: | CODING | ||||||||||||||||||||||||
| Position: |
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| Sequence: |
GGACACCACTGAGGTGGCCATGGTAAGAAGCTGTATCAGGCAGGGTCTGATTAAAGTGTCTCAAhide sequence |
| RefSeq Acc Id: | NM_001270846 ⟹ NP_001257775 | |||||||||||||||||||
| RefSeq Status: | VALIDATED | |||||||||||||||||||
| Type: | CODING | |||||||||||||||||||
| Position: |
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| Sequence: |
GGACACCACTGAGGTGGCCATGGAAAGCAGAGTCACAGGGCACCATGCGCTCCTCAACCAACTThide sequence |
| RefSeq Acc Id: | NM_001270847 ⟹ NP_001257776 | |||||||||||||||||||
| RefSeq Status: | VALIDATED | |||||||||||||||||||
| Type: | CODING | |||||||||||||||||||
| Position: |
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| Sequence: |
GGACACCACTGAGGTGGCCATGGTATCCATTTCAACATTTCTGGCTGTGTGGCAGCAGGCCAGChide sequence |
| RefSeq Acc Id: | NM_001270848 ⟹ NP_001257777 | |||||||||||||||||||
| RefSeq Status: | VALIDATED | |||||||||||||||||||
| Type: | CODING | |||||||||||||||||||
| Position: |
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| Sequence: |
GCAGTTGGAACAACTTGTAGAGCTCTCAGCAACTTCTCCAACACCAAGTCGGCCTGGATGCTGChide sequence |
| RefSeq Acc Id: | XM_008769542 ⟹ XP_008767764 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
GAAAGCAGAGTCACAGGGCACCATGCGCTCCTCAACCAACTTCTGAAGGACCTTCAAGGGAGCThide sequence |
| RefSeq Acc Id: | XM_017598698 ⟹ XP_017454187 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
AGCTCTGCAGTCAGGCGCCATTGTCAGGTCTTTTTGGTGACCCAAAGCTACCAGTCATTCCATChide sequence |
Protein Sequences| Protein RefSeqs | NP_001073157 | (Get FASTA) | NCBI Sequence Viewer |
| NP_001257775 | (Get FASTA) | NCBI Sequence Viewer | |
| NP_001257776 | (Get FASTA) | NCBI Sequence Viewer | |
| NP_001257777 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_008767764 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017454187 | (Get FASTA) | NCBI Sequence Viewer | |
| GenBank Protein | ABB89471 | (Get FASTA) | NCBI Sequence Viewer |
| ABL06995 | (Get FASTA) | NCBI Sequence Viewer | |
| ABL06996 | (Get FASTA) | NCBI Sequence Viewer | |
| ABL06997 | (Get FASTA) | NCBI Sequence Viewer | |
| ABL06998 | (Get FASTA) | NCBI Sequence Viewer | |
| ABL06999 | (Get FASTA) | NCBI Sequence Viewer | |
| EDM09742 | (Get FASTA) | NCBI Sequence Viewer | |
| EDM09743 | (Get FASTA) | NCBI Sequence Viewer |
| RefSeq Acc Id: | NP_001073157 ⟸ NM_001079689 |
| - Peptide Label: | precursor |
| - UniProtKB: | A0S5V8 (UniProtKB/TrEMBL) |
| - Sequence: |
MVQSLALAGVTTLLMIQWGSAAKLFCYFTNWAQYRSGAARFLPRDVDPNLCTHVIYAFAGLNNHhide sequence |
| RefSeq Acc Id: | NP_001257777 ⟸ NM_001270848 |
| - Peptide Label: | precursor |
| - UniProtKB: | A0S5V8 (UniProtKB/TrEMBL) |
| - Sequence: |
MVQSLALAGVTTLLMIQWGSAAKLFCYFTNWAQYRSGAARFLPRDVDPNLCTHVIYAFAGLNNHhide sequence |
| RefSeq Acc Id: | NP_001257775 ⟸ NM_001270846 |
| - Peptide Label: | precursor |
| - UniProtKB: | A0S5V8 (UniProtKB/TrEMBL) |
| - Sequence: |
MVQSLALAGVTTLLMIQWGSAAKLFCYFTNWAQYRSGAARFLPRDVDPNLCTHVIYAFAGLNNHhide sequence |
| RefSeq Acc Id: | NP_001257776 ⟸ NM_001270847 |
| - Peptide Label: | precursor |
| - UniProtKB: | A0S5V8 (UniProtKB/TrEMBL) |
| - Sequence: |
MVQSLALAGVTTLLMIQWGSAAKLFCYFTNWAQYRSGAARFLPRDVDPNLCTHVIYAFAGLNNHhide sequence |
| RefSeq Acc Id: | XP_008767764 ⟸ XM_008769542 |
| - Peptide Label: | isoform X2 |
| - Sequence: |
MVQSLALAGSAAKLFCYFTNWAQYRSGAARFLPRDVDPNLCTHVIYAFAGLNNHQVSTVEPNDEhide sequence |
| RefSeq Acc Id: | XP_017454187 ⟸ XM_017598698 |
| - Peptide Label: | isoform X1 |
| - UniProtKB: | A0S5V8 (UniProtKB/TrEMBL) |
| - Sequence: |
MVQSLALAGVTTLLMIQWGSAAKLFCYFTNWAQYRSGAARFLPRDVDPNLCTHVIYAFAGLNNHhide sequence |
TranscriptomeStrain Sequence Variants (Rnor 6.0)
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External Database Links| Database | Acc Id | Source(s) |
| AGR Gene | RGD:1305646 | AgrOrtholog |
| Ensembl Genes | ENSRNOG00000028072 | ENTREZGENE, UniProtKB/TrEMBL |
| Ensembl Protein | ENSRNOP00000036477 | ENTREZGENE, UniProtKB/TrEMBL |
| ENSRNOP00000070204 | ENTREZGENE, UniProtKB/TrEMBL | |
| Ensembl Transcript | ENSRNOT00000035658 | ENTREZGENE, UniProtKB/TrEMBL |
| ENSRNOT00000080768 | ENTREZGENE, UniProtKB/TrEMBL | |
| Gene3D-CATH | 3.10.50.10 | UniProtKB/TrEMBL |
| InterPro | Chitin-bd_dom_sf | UniProtKB/TrEMBL |
| Chitin-bd_peritrophin-A | UniProtKB/TrEMBL | |
| Chitinase_II | UniProtKB/TrEMBL | |
| Chitinase_insertion | UniProtKB/TrEMBL | |
| Glyco_hydro18cat | UniProtKB/TrEMBL | |
| Glyco_hydro_18_chit_AS | UniProtKB/TrEMBL | |
| Glyco_hydro_catalytic_core | UniProtKB/TrEMBL | |
| KEGG Report | rno:289032 | UniProtKB/TrEMBL |
| NCBI Gene | 289032 | ENTREZGENE |
| Pfam | CBM_14 | UniProtKB/TrEMBL |
| Glyco_hydro_18 | UniProtKB/TrEMBL | |
| PhenoGen | Chit1 | PhenoGen |
| PROSITE | CHIT_BIND_II | UniProtKB/TrEMBL |
| CHITINASE_18 | UniProtKB/TrEMBL | |
| SMART | Glyco_18 | UniProtKB/TrEMBL |
| Superfamily-SCOP | Chitin_bind_PerA | UniProtKB/TrEMBL |
| Glyco_hydro_cat | UniProtKB/TrEMBL | |
| SSF54556 | UniProtKB/TrEMBL | |
| UniGene | Rn.47819 | ENTREZGENE |
| UniProt | A0S5V8 | ENTREZGENE, UniProtKB/TrEMBL |
Nomenclature History| Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
|---|---|---|---|---|---|---|---|
| 2015-12-09 | Chit1 | chitinase 1 | Chit1 | chitinase 1 (chitotriosidase) | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
| 2008-04-30 | Chit1 | chitinase 1 (chitotriosidase) | Chit1_predicted | chitinase 1 (chitotriosidase) (predicted) | 'predicted' is removed | 2292626 | APPROVED |
| 2005-01-12 | Chit1_predicted | chitinase 1 (chitotriosidase) (predicted) | Symbol and Name status set to approved | 70820 | APPROVED |
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| More on Chit1 | |
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Alliance Gene |
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NCBI Gene |
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Ensembl Gene |
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JBrowse: rn5 rn6 |
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NCBI Genome Data Viewer |
| CRRD Object Information | |
| CRRD ID: | 1305646 |
| Created: | 2005-01-12 |
| Species: | Rattus norvegicus |
| Last Modified: | 2019-11-27 |
| Status: | ACTIVE |
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.
