Gene: Vsx1 (visual system homeobox 1) Rattus norvegicus
Analyze
Symbol: Vsx1
Name: visual system homeobox 1
Description: Predicted to have chromatin binding activity and transcription regulatory region DNA binding activity; predicted to be involved in neuron differentiation, regulation of transcription, DNA-templated, and visual perception; predicted to localize to the nucleus; orthologous to human VSX1 (visual system homeobox 1); INTERACTS WITH aflatoxin B1; bisphenol A; endosulfan.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC366228; LOC689704; similar to visual system homeobox 1 homolog; visual system homeobox 1 homolog; visual system homeobox 1 homolog (zebrafish)
Orthologs:
Homo sapiens (human) : VSX1 (visual system homeobox 1)  HGNC  Alliance
Mus musculus (house mouse) : Vsx1 (visual system homeobox 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Vsx1 (visual system homeobox 1)
Pan paniscus (bonobo/pygmy chimpanzee) : VSX1 (visual system homeobox 1)
Canis lupus familiaris (dog) : VSX1 (visual system homeobox 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Vsx1 (visual system homeobox 1)
Sus scrofa (pig) : VSX1 (visual system homeobox 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.03146,484,235 - 146,494,757 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.03152,843,269 - 152,850,868 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43141,322,816 - 141,330,415 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.13141,229,916 - 141,235,812 (-)NCBI
Celera3138,276,455 - 138,284,054 (-)NCBICelera
Cytogenetic Map3q41NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 5.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Vsx1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1305667
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.