Gene: Otx2 (orthodenticle homeobox 2) Rattus norvegicus
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Symbol: Otx2
Name: orthodenticle homeobox 2
Description: Predicted to have DNA-binding transcription activator activity, RNA polymerase II-specific, RNA polymerase II proximal promoter sequence-specific DNA binding activity, and protein heterodimerization activity; predicted to be involved in several processes, including animal organ development, nervous system development, and regionalization; predicted to localize to several cellular components, including the cytoplasm, growth cone, and nucleus; orthologous to human OTX2 (orthodenticle homeobox 2); INTERACTS WITH all-trans-retinoic acid; ammonium chloride; benzo[a]pyrene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: homeobox Otx2; homeobox protein OTX2; LOC305858; orthodenticle homolog 2; orthodenticle homolog 2 (Drosophila)
Orthologs:
Homo sapiens (human) : OTX2 (orthodenticle homeobox 2)  HGNC  Alliance
Mus musculus (house mouse) : Otx2 (orthodenticle homeobox 2)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Otx2 (orthodenticle homeobox 2)
Pan paniscus (bonobo/pygmy chimpanzee) : OTX2 (orthodenticle homeobox 2)
Canis lupus familiaris (dog) : OTX2 (orthodenticle homeobox 2)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Otx2 (orthodenticle homeobox 2)
Sus scrofa (pig) : OTX2 (orthodenticle homeobox 2)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01525,500,037 - 25,511,619 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01529,425,136 - 29,435,678 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41524,622,851 - 24,632,435 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11524,638,550 - 24,643,418 (-)NCBI
Celera1522,321,144 - 22,330,728 (-)NCBICelera
Cytogenetic Map15p14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
 
More on Otx2
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1305705
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.