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Gene: Clec16a (C-type lectin domain containing 16A) Rattus norvegicus
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Symbol: Clec16a
Name: C-type lectin domain containing 16A
Description: Predicted to be involved in several processes, including negative regulation of proteasomal ubiquitin-dependent protein catabolic process; positive regulation of TORC1 signaling; and regulation of macroautophagy. Predicted to localize to the Golgi apparatus; cytosol; and endolysosome membrane. Human ortholog(s) of this gene implicated in Addison's disease; multiple sclerosis; rheumatoid arthritis; and type 1 diabetes mellitus. Orthologous to human CLEC16A (C-type lectin domain containing 16A); INTERACTS WITH bisphenol A; oxaliplatin; topotecan.
Type: protein-coding
RefSeq Status: MODEL
Also known as: C-type lectin domain family 16, member A; LOC287044; RGD1305773; similar to CG12753-PA
Orthologs:
Homo sapiens (human) : CLEC16A (C-type lectin domain containing 16A)  HGNC  Alliance
Mus musculus (house mouse) : Clec16a (C-type lectin domain family 16, member A)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Clec16a (C-type lectin domain containing 16A)
Pan paniscus (bonobo/pygmy chimpanzee) : CLEC16A (C-type lectin domain containing 16A)
Canis lupus familiaris (dog) : CLEC16A (C-type lectin domain containing 16A)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Clec16a (C-type lectin domain containing 16A)
Sus scrofa (pig) : CLEC16A (C-type lectin domain containing 16A)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0105,002,196 - 5,196,914 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl105,009,826 - 5,196,892 (-)Ensembl
Rnor_5.0103,827,156 - 4,020,226 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4104,870,719 - 5,069,691 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1104,873,502 - 5,072,213 (-)NCBI
Celera103,948,821 - 4,141,759 (-)NCBICelera
Cytogenetic Map10q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Clec16a
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1305773
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.