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Gene: Trim21 (tripartite motif-containing 21) Rattus norvegicus
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Symbol: Trim21
Name: tripartite motif-containing 21
Description: Predicted to have protein homodimerization activity; protein kinase binding activity; and ubiquitin protein ligase activity. Predicted to be involved in several processes, including negative regulation of viral process; protein ubiquitination; and regulation of DNA-binding transcription factor activity. Predicted to colocalize with SCF ubiquitin ligase complex. Orthologous to human TRIM21 (tripartite motif containing 21); PARTICIPATES IN systemic lupus erythematosus pathway; INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; acetamide.
Type: protein-coding
RefSeq Status: INFERRED
Also known as: 52 kDa Ro protein; E3 ubiquitin-protein ligase TRIM21; LOC308901; tripartite motif protein 21
Orthologs:
Homo sapiens (human) : TRIM21 (tripartite motif containing 21)  HGNC  Alliance
Mus musculus (house mouse) : Trim21 (tripartite motif-containing 21)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Trim21 (tripartite motif containing 21)
Pan paniscus (bonobo/pygmy chimpanzee) : TRIM21 (tripartite motif containing 21)
Canis lupus familiaris (dog) : TRIM21 (tripartite motif containing 21)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Trim21 (tripartite motif containing 21)
Sus scrofa (pig) : TRIM21 (tripartite motif containing 21)
Chlorocebus sabaeus (African green monkey) : TRIM21 (tripartite motif containing 21)
Heterocephalus glaber (naked mole-rat) : Trim21 (tripartite motif containing 21)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01167,686,148 - 167,708,735 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1167,686,173 - 167,708,714 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01173,871,557 - 173,894,155 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41160,175,882 - 160,187,661 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11160,254,898 - 160,276,114 (-)NCBI
Celera1155,032,978 - 155,043,976 (-)NCBICelera
Cytogenetic Map1q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Trim21
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1305795
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2020-07-28
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.