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Gene: Lcmt2 (leucine carboxyl methyltransferase 2) Rattus norvegicus
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Symbol: Lcmt2
Name: leucine carboxyl methyltransferase 2
Description: Predicted to have tRNA methyltransferase activity. Predicted to be involved in tRNA methylation and wybutosine biosynthetic process. Orthologous to human LCMT2 (leucine carboxyl methyltransferase 2); INTERACTS WITH 2,4-dinitrotoluene; bisphenol A; piperonyl butoxide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC296098; tRNA wybutosine-synthesizing protein 4; tRNA wybutosine-synthesizing protein 4 homolog; tRNA yW-synthesizing protein 4 homolog; tRNA(Phe) (7-(3-amino-3-(methoxycarbonyl)propyl)wyosine(37)-N)-methoxycarbonyltransferase; tRNA(Phe) (7-(3-amino-3-carboxypropyl)wyosine(37)-O)-methyltransferase
Orthologs:
Homo sapiens (human) : LCMT2 (leucine carboxyl methyltransferase 2)  HGNC  Alliance
Mus musculus (house mouse) : Lcmt2 (leucine carboxyl methyltransferase 2)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Lcmt2 (leucine carboxyl methyltransferase 2)
Pan paniscus (bonobo/pygmy chimpanzee) : LCMT2 (leucine carboxyl methyltransferase 2)
Canis lupus familiaris (dog) : LCMT2 (leucine carboxyl methyltransferase 2)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Lcmt2 (leucine carboxyl methyltransferase 2)
Sus scrofa (pig) : LCMT2 (leucine carboxyl methyltransferase 2)
Chlorocebus sabaeus (green monkey) : LCMT2 (leucine carboxyl methyltransferase 2)
Heterocephalus glaber (naked mole-rat) : Lcmt2 (leucine carboxyl methyltransferase 2)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.03113,089,646 - 113,091,770 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3113,089,647 - 113,091,770 (-)Ensembl
Rnor_5.03119,629,543 - 119,631,667 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43107,929,444 - 107,931,568 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.13107,825,872 - 107,827,996 (-)NCBI
Celera3107,004,026 - 107,006,150 (-)NCBICelera
Cytogenetic Map3q35NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Lcmt2
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1305829
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-11-27
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.