Gene: Syde1 (synapse defective Rho GTPase homolog 1) Rattus norvegicus
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Symbol: Syde1
Name: synapse defective Rho GTPase homolog 1
Description: Predicted to have GTPase activator activity; predicted to be involved in several processes, including positive regulation of synaptic transmission, positive regulation of trophoblast cell migration, and regulation of cytoskeleton organization; predicted to localize to the cerebellar mossy fiber, cytosol, and synaptic membrane; orthologous to human SYDE1 (synapse defective Rho GTPase homolog 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; benzo[a]pyrene; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC362842; RGD1305857; rho GTPase-activating protein SYDE1; similar to hypothetical protein FLJ13511; synapse defective 1, Rho GTPase, homolog 1; synapse defective 1, Rho GTPase, homolog 1 (C. elegans)
Orthologs:
Homo sapiens (human) : SYDE1 (synapse defective Rho GTPase homolog 1)  HGNC  Alliance
Mus musculus (house mouse) : Syde1 (synapse defective 1, Rho GTPase, homolog 1 (C. elegans))  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Syde1 (synapse defective Rho GTPase homolog 1)
Pan paniscus (bonobo/pygmy chimpanzee) : SYDE1 (synapse defective Rho GTPase homolog 1)
Canis lupus familiaris (dog) : SYDE1 (synapse defective Rho GTPase homolog 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Syde1 (synapse defective Rho GTPase homolog 1)
Sus scrofa (pig) : SYDE1 (synapse defective Rho GTPase homolog 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0714,037,646 - 14,043,632 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0714,191,914 - 14,201,067 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4712,586,155 - 12,592,141 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1712,586,131 - 12,592,156 (+)NCBI
Celera79,156,062 - 9,160,395 (+)NCBICelera
Cytogenetic Map7q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Syde1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1305857
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.