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Gene: Spart (spartin) Rattus norvegicus
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Symbol: Spart
Name: spartin
Description: Predicted to have ubiquitin protein ligase binding activity. Predicted to be involved in several processes, including lipid droplet organization; negative regulation of BMP signaling pathway; and negative regulation of collateral sprouting in absence of injury. Predicted to localize to several cellular components, including the lipid droplet; midbody; and mitochondrial outer membrane. Human ortholog(s) of this gene implicated in Troyer syndrome. Orthologous to human SPART (spartin); INTERACTS WITH 17beta-estradiol; acrylamide; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: LOC295053; spastic paraplegia 20 (Troyer syndrome); spastic paraplegia 20 (Troyer syndrome) homolog; spastic paraplegia 20 (Troyer syndrome) homolog (human); spastic paraplegia 20, spartin (Troyer syndrome); spastic paraplegia 20, spartin (Troyer syndrome) homolog; spastic paraplegia 20, spartin (Troyer syndrome) homolog (human); Spg20
Orthologs:
Homo sapiens (human) : SPART (spartin)  HGNC  Alliance
Mus musculus (house mouse) : Spg20 (spastic paraplegia 20, spartin (Troyer syndrome) homolog (human))  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Spart (spartin)
Pan paniscus (bonobo/pygmy chimpanzee) : SPART (spartin)
Canis lupus familiaris (dog) : SPART (spartin)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Spart (spartin)
Sus scrofa (pig) : SPART (spartin)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.02144,522,382 - 144,548,968 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2144,522,072 - 144,548,917 (+)Ensembl
Rnor_5.02163,938,864 - 163,965,175 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42144,335,236 - 144,362,246 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12144,290,137 - 144,310,595 (+)NCBI
Celera2133,776,474 - 133,803,061 (+)NCBICelera
Cytogenetic Map2q26NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Spart
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1305900
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.