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Gene: Lsm3 (LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated) Rattus norvegicus
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Symbol: Lsm3
Name: LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated
CRRD ID: 1305971
Description: Predicted to have U6 snRNA 3'-end binding activity. Predicted to be involved in cytoplasmic mRNA processing body assembly and mRNA splicing, via spliceosome. Predicted to localize to several cellular components, including Lsm1-7-Pat1 complex; Lsm2-8 complex; and nucleus. Orthologous to human LSM3 (LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated); PARTICIPATES IN spliceosome pathway; RNA degradation pathway; INTERACTS WITH 2,4-dinitrotoluene; acetamide; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC297455; LSM3 homolog, U6 small nuclear RNA associated; LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae); LSM3 U6 small nuclear RNA and mRNA degradation associated; U6 snRNA-associated Sm-like protein LSm3
Orthologs:
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.04123,162,086 - 123,168,330 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4123,162,086 - 123,168,330 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04187,377,370 - 187,383,614 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44125,700,026 - 125,706,270 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.14125,945,303 - 125,950,751 (+)NCBI
Celera4112,940,482 - 112,946,726 (+)NCBICelera
Cytogenetic Map4q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Lsm3
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1305971
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.