 Gene-Chemical Interaction Annotations | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Gene Ontology Annotations |
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Analyze GeneStrainQTL List |
 Gene Annotator (Functional Annotation) unavailable |
 Gene Annotator (Annotation Distribution) unavailable |
 Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable |
Gene Annotator (Functional Annotation) |
Gene Annotator (Annotation Distribution) |
Variant Visualizer (Genomic Variants) |
 InterViewer (Protein-Protein Interactions) unavailable |
 Gviewer (Genome Viewer) unavailable |
 Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable |
InterViewer (Protein-Protein Interactions) |
GViewer (Genome Viewer) |
Variant Visualizer (Damaging Variants) |
 Gene Annotator (Annotation Comparison) unavailable |
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Gene Annotator (Annotation Comparison) |
OLGA (Gene List Generator) |
Excel (Download) |
 MOET (Multi-Ontology Enrichement) unavailable |
 GOLF (Gene-Ortholog Location Finder) unavailable |
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MOET (Multi-Ontology Enrichement) |
GOLF (Gene-Ortholog Location Finder) |
Gene Ontology AnnotationsDisease Annotations
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Gene-Chemical Interaction Annotations
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Gene Ontology AnnotationsBiological Process
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Cellular Component
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Molecular Function
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References - curated| 1. | MGD data from the GO Consortium |
| 2. | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
| 3. | RGD automated import pipeline for gene-chemical interactions |
References - uncuratedGenomics
Comparative Map Data| Atf7ip (Rattus norvegicus - Norway rat) |
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| ATF7IP (Homo sapiens - human) |
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| Atf7ip (Mus musculus - house mouse) |
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| Atf7ip (Chinchilla lanigera - long-tailed chinchilla) |
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| ATF7IP (Pan paniscus - bonobo/pygmy chimpanzee) |
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| ATF7IP (Canis lupus familiaris - dog) |
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| Atf7ip (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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| ATF7IP (Sus scrofa - pig) |
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Position Markers| RH143659 |
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| BE110602 |
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| AU049940 |
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QTLs in Region (Rnor_6.0)| The following QTLs overlap with this region. |  | Full Report | | CSV | | TAB | | Printer | | Gviewer |
miRNA Target Status
Predicted Target Of
| The detailed report is available here: | | Full Report | | CSV | | TAB | | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
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Expression
RNA-SEQ ExpressionHigh: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM
| testis | heart | brain | ovary | uterus | skeletal muscle tissue | colon | gastrocnemius | forebrain | hindbrain | lung | spleen | liver | kidney | adrenal gland | thymus | |
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| High | ||||||||||||||||
| Medium | 22 | 41 | 23 | 15 | 4 | 3 | 3 | 8 | 26 | 25 | 11 | 11 | 36 | 35 | 8 | 8 |
| Low | 2 | 5 | ||||||||||||||
| Below cutoff |
View RNA-SEQ Expression Data
Sequence
Nucleotide Sequences| RefSeq Transcripts | NM_001107893 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| XM_003749858 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_003753954 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006225104 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006225106 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006225107 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006225108 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006225109 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006237573 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006237575 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006237577 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006237578 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_008775863 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017593059 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017593060 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| GenBank Nucleotide | AABR07062350 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| AABR07073078 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01033315 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01033316 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AC117362 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| CH473964 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| FQ190019 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
Reference Sequences
| RefSeq Acc Id: | XM_003749858 ⟹ XP_003749906 | ||||||||||||||
| RefSeq Status: | |||||||||||||||
| Type: | CODING | ||||||||||||||
| Position: |
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| Sequence: |
CGTGCTGGGGAGAAGCGGGTTTGTTTTTGAATCTGCGGTGGCGGCGAGTGGAGCGCACGGCTGAhide sequence |
| RefSeq Acc Id: | XM_003753954 ⟹ XP_003754002 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
CGTGCTGGGGAGAAGCGGGTTTGTTTTTGAATCTGCGGTGGCGGCGAGTGGAGCGCACGGCTGAhide sequence |
| RefSeq Acc Id: | XM_006225104 ⟹ XP_006225166 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
CAACAAAACCAACAACAACCACAAAAAACCCAAAACCCAAAAAACAAACCTCCTTCCTGTCTAChide sequence |
| RefSeq Acc Id: | XM_006225106 ⟹ XP_006225168 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
CAAACTCACTCTGTAGACCAGGCTGGCACCTAAAGAAATTTTAAACAAGTACATCTACACTGTAhide sequence |
| RefSeq Acc Id: | XM_006225107 ⟹ XP_006225169 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
TGCGCGTGTGTGTGTGTGTGTTTTGAATCAATTTTAGTATTTATTCAGGACTATTTTTAGAAAChide sequence |
| RefSeq Acc Id: | XM_006225108 ⟹ XP_006225170 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
CTGCCTTTTGATTAAAAAAGTACTTCCGGTAAAAACTTAATTCATTACATCATGTGATGTGCTThide sequence |
| RefSeq Acc Id: | XM_006225109 ⟹ XP_006225171 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
CAACAAAACCAACAACAACCACAAAAAACCCAAAACCCAAAAAACAAACCTCCTTCCTGTCTAChide sequence |
| RefSeq Acc Id: | XM_006237573 ⟹ XP_006237635 | ||||||||||||||
| RefSeq Status: | |||||||||||||||
| Type: | CODING | ||||||||||||||
| Position: |
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| Sequence: |
CAACAAAACCAACAACAACCACAAAAAACCCAAAACCCAAAAAACAAACCTCCTTCCTGTCTAChide sequence |
| RefSeq Acc Id: | XM_006237575 ⟹ XP_006237637 | ||||||||||||||
| RefSeq Status: | |||||||||||||||
| Type: | CODING | ||||||||||||||
| Position: |
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| Sequence: |
CAAACTCACTCTGTAGACCAGGCTGGCACCTAAAGAAATTTTAAACAAGTACATCTACACTGTAhide sequence |
| RefSeq Acc Id: | XM_006237577 ⟹ XP_006237639 | ||||||||||||||
| RefSeq Status: | |||||||||||||||
| Type: | CODING | ||||||||||||||
| Position: |
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| Sequence: |
TGCGCGTGTGTGTGTGTGTGTTTTGAATCAATTTTAGTATTTATTCAGGACTATTTTTAGAAAChide sequence |
| RefSeq Acc Id: | XM_006237578 ⟹ XP_006237640 | ||||||||||||||
| RefSeq Status: | |||||||||||||||
| Type: | CODING | ||||||||||||||
| Position: |
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| Sequence: |
CAACAAAACCAACAACAACCACAAAAAACCCAAAACCCAAAAAACAAACCTCCTTCCTGTCTAChide sequence |
| RefSeq Acc Id: | XM_008775863 ⟹ XP_008774085 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
TTATAGATTTTAACTCATTATGTAGAAATGCTATTTTTATGTATTGTTCCTGTTTAACTGATTChide sequence |
| RefSeq Acc Id: | XM_017593059 ⟹ XP_017448548 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
CTGCCTTTTGATTAAAAAAGTACTTCCGGTAAAAACTTAATTCATTACATCATGTGATGTGCTThide sequence |
| RefSeq Acc Id: | XM_017593060 ⟹ XP_017448549 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
TTATAGATTTTAACTCATTATGTAGAAATGCTATTTTTATGTATTGTTCCTGTTTAACTGATTChide sequence |
Protein Sequences| Protein RefSeqs | NP_001101363 | (Get FASTA) | NCBI Sequence Viewer |
| XP_003749906 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_003754002 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006225166 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006225168 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006225169 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006225170 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006225171 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006237635 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006237637 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006237639 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006237640 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_008774085 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017448548 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017448549 | (Get FASTA) | NCBI Sequence Viewer | |
| GenBank Protein | EDM01611 | (Get FASTA) | NCBI Sequence Viewer |
| EDM01612 | (Get FASTA) | NCBI Sequence Viewer | |
| EDM01613 | (Get FASTA) | NCBI Sequence Viewer | |
| EDM01614 | (Get FASTA) | NCBI Sequence Viewer |
Reference Sequences
| RefSeq Acc Id: | XP_003749906 ⟸ XM_003749858 |
| - Peptide Label: | isoform X3 |
| - UniProtKB: | D3ZS88 (UniProtKB/TrEMBL) |
| - Sequence: |
MDNIEEPQKKVFKARKTMRASDRQQLDAVHRVKEELLRTDGKLLNGNHENGDLDPTSPLENTDChide sequence |
| RefSeq Acc Id: | XP_003754002 ⟸ XM_003753954 |
| - Peptide Label: | isoform X3 |
| - UniProtKB: | D3ZS88 (UniProtKB/TrEMBL) |
| - Sequence: |
MDNIEEPQKKVFKARKTMRASDRQQLDAVHRVKEELLRTDGKLLNGNHENGDLDPTSPLENTDChide sequence |
| RefSeq Acc Id: | XP_006225171 ⟸ XM_006225109 |
| - Peptide Label: | isoform X4 |
| - Sequence: |
MHQDLRFKMDNIEEPQKKVFKARKTMRASDRQQLDAVHRVKEELLRTDGKLLNGNHENGDLDPThide sequence |
| RefSeq Acc Id: | XP_006225166 ⟸ XM_006225104 |
| - Peptide Label: | isoform X1 |
| - Sequence: |
MHQDLRFKMDNIEEPQKKVFKARKTMRASDRQQLDAVHRVKEELLRTDGKLLNGNHENGDLDPThide sequence |
| RefSeq Acc Id: | XP_006225168 ⟸ XM_006225106 |
| - Peptide Label: | isoform X2 |
| - Sequence: |
MGFKMDNIEEPQKKVFKARKTMRASDRQQLDAVHRVKEELLRTDGKLLNGNHENGDLDPTSPLEhide sequence |
| RefSeq Acc Id: | XP_006225169 ⟸ XM_006225107 |
| - Peptide Label: | isoform X3 |
| - UniProtKB: | D3ZS88 (UniProtKB/TrEMBL) |
| - Sequence: |
MDNIEEPQKKVFKARKTMRASDRQQLDAVHRVKEELLRTDGKLLNGNHENGDLDPTSPLENTDChide sequence |
| RefSeq Acc Id: | XP_006225170 ⟸ XM_006225108 |
| - Peptide Label: | isoform X3 |
| - UniProtKB: | D3ZS88 (UniProtKB/TrEMBL) |
| - Sequence: |
MDNIEEPQKKVFKARKTMRASDRQQLDAVHRVKEELLRTDGKLLNGNHENGDLDPTSPLENTDChide sequence |
| RefSeq Acc Id: | XP_006237640 ⟸ XM_006237578 |
| - Peptide Label: | isoform X4 |
| - Sequence: |
MHQDLRFKMDNIEEPQKKVFKARKTMRASDRQQLDAVHRVKEELLRTDGKLLNGNHENGDLDPThide sequence |
| RefSeq Acc Id: | XP_006237635 ⟸ XM_006237573 |
| - Peptide Label: | isoform X1 |
| - Sequence: |
MHQDLRFKMDNIEEPQKKVFKARKTMRASDRQQLDAVHRVKEELLRTDGKLLNGNHENGDLDPThide sequence |
| RefSeq Acc Id: | XP_006237637 ⟸ XM_006237575 |
| - Peptide Label: | isoform X2 |
| - Sequence: |
MGFKMDNIEEPQKKVFKARKTMRASDRQQLDAVHRVKEELLRTDGKLLNGNHENGDLDPTSPLEhide sequence |
| RefSeq Acc Id: | XP_006237639 ⟸ XM_006237577 |
| - Peptide Label: | isoform X3 |
| - UniProtKB: | D3ZS88 (UniProtKB/TrEMBL) |
| - Sequence: |
MDNIEEPQKKVFKARKTMRASDRQQLDAVHRVKEELLRTDGKLLNGNHENGDLDPTSPLENTDChide sequence |
| RefSeq Acc Id: | XP_008774085 ⟸ XM_008775863 |
| - Peptide Label: | isoform X3 |
| - UniProtKB: | D3ZS88 (UniProtKB/TrEMBL) |
| - Sequence: |
MDNIEEPQKKVFKARKTMRASDRQQLDAVHRVKEELLRTDGKLLNGNHENGDLDPTSPLENTDChide sequence |
| RefSeq Acc Id: | XP_017448549 ⟸ XM_017593060 |
| - Peptide Label: | isoform X3 |
| - UniProtKB: | D3ZS88 (UniProtKB/TrEMBL) |
| - Sequence: |
MDNIEEPQKKVFKARKTMRASDRQQLDAVHRVKEELLRTDGKLLNGNHENGDLDPTSPLENTDChide sequence |
| RefSeq Acc Id: | XP_017448548 ⟸ XM_017593059 |
| - Peptide Label: | isoform X3 |
| - UniProtKB: | D3ZS88 (UniProtKB/TrEMBL) |
| - Sequence: |
MDNIEEPQKKVFKARKTMRASDRQQLDAVHRVKEELLRTDGKLLNGNHENGDLDPTSPLENTDChide sequence |
TranscriptomeStrain Variation
Strain Sequence Variants (Rnor 6.0)
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Additional Information
External Database Links| Database | Acc Id | Source(s) |
| AGR Gene | RGD:1306030 | AgrOrtholog |
| Ensembl Genes | ENSRNOG00000008870 | ENTREZGENE, UniProtKB/TrEMBL |
| Ensembl Protein | ENSRNOP00000011803 | ENTREZGENE, UniProtKB/TrEMBL |
| Ensembl Transcript | ENSRNOT00000011803 | ENTREZGENE, UniProtKB/TrEMBL |
| Gene3D-CATH | 2.60.40.10 | UniProtKB/TrEMBL |
| InterPro | ATF7-int | UniProtKB/TrEMBL |
| ATF7IP_BD | UniProtKB/TrEMBL | |
| Fibronectin_type3 | UniProtKB/TrEMBL | |
| FN3_sf | UniProtKB/TrEMBL | |
| Ig-like_fold | UniProtKB/TrEMBL | |
| KEGG Report | rno:312800 | UniProtKB/TrEMBL |
| NCBI Gene | 312800 | ENTREZGENE |
| PANTHER | PTHR23210 | UniProtKB/TrEMBL |
| Pfam | ATF7IP_BD | UniProtKB/TrEMBL |
| fn3_4 | UniProtKB/TrEMBL | |
| PhenoGen | Atf7ip | PhenoGen |
| PROSITE | FN3 | UniProtKB/TrEMBL |
| Superfamily-SCOP | FN_III-like | UniProtKB/TrEMBL |
| UniProt | D3ZS88 | ENTREZGENE, UniProtKB/TrEMBL |
Nomenclature History| Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
|---|---|---|---|---|---|---|---|
| 2008-04-30 | Atf7ip | activating transcription factor 7 interacting protein | Atf7ip_predicted | activating transcription factor 7 interacting protein (predicted) | 'predicted' is removed | 2292626 | APPROVED |
| 2005-01-12 | Atf7ip_predicted | activating transcription factor 7 interacting protein (predicted) | Symbol and Name status set to approved | 70820 | APPROVED |
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| More on Atf7ip | |
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Alliance Gene |
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NCBI Gene |
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Ensembl Gene |
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JBrowse: rn5 rn6 |
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NCBI Genome Data Viewer |
| CRRD Object Information | |
| CRRD ID: | 1306030 |
| Created: | 2005-01-12 |
| Species: | Rattus norvegicus |
| Last Modified: | 2019-11-27 |
| Status: | ACTIVE |
