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Gene: Pphln1 (periphilin 1) Rattus norvegicus
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Symbol: Pphln1
Name: periphilin 1
CRRD ID: 1306207
Description: Predicted to be involved in negative regulation of gene expression, epigenetic; positive regulation of DNA methylation-dependent heterochromatin assembly; and protein localization to heterochromatin. Predicted to localize to Golgi apparatus; cytosol; and nucleoplasm. Orthologous to human PPHLN1 (periphilin 1); INTERACTS WITH 2,6-dinitrotoluene; bisphenol A; flutamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC366975; periphilin-1
Orthologs:
Homo sapiens (human) : PPHLN1 (periphilin 1)  HGNC  Alliance
Mus musculus (house mouse) : Pphln1 (periphilin 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Pphln1 (periphilin 1)
Pan paniscus (bonobo/pygmy chimpanzee) : PPHLN1 (periphilin 1)
Canis lupus familiaris (dog) : PPHLN1 (periphilin 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Pphln1 (periphilin 1)
Sus scrofa (pig) : PPHLN1 (periphilin 1)
Chlorocebus sabaeus (African green monkey) : PPHLN1 (periphilin 1)
Heterocephalus glaber (naked mole-rat) : Pphln1 (periphilin 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.07134,602,109 - 134,693,807 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7134,603,121 - 134,695,864 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07134,269,149 - 134,361,038 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47131,866,854 - 131,958,060 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.17131,951,572 - 132,034,500 (+)NCBI
Celera7120,936,842 - 121,027,416 (+)NCBICelera
Cytogenetic Map7q35NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Pphln1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1306207
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.