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Gene: Tfap2b (transcription factor AP-2 beta) Rattus norvegicus
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Symbol: Tfap2b
Name: transcription factor AP-2 beta
Description: Exhibits chromatin binding activity. Involved in response to drug and response to lithium ion. Localizes to nucleus. Human ortholog(s) of this gene implicated in Char syndrome and patent ductus arteriosus. Orthologous to human TFAP2B (transcription factor AP-2 beta); INTERACTS WITH 1,2-dimethylhydrazine; 3-chloropropane-1,2-diol; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC301285; Tcfap2b; transcription factor AP-2-beta
Orthologs:
Homo sapiens (human) : TFAP2B (transcription factor AP-2 beta)  HGNC  Alliance
Mus musculus (house mouse) : Tfap2b (transcription factor AP-2 beta)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Tfap2b (transcription factor AP-2 beta)
Pan paniscus (bonobo/pygmy chimpanzee) : TFAP2B (transcription factor AP-2 beta)
Canis lupus familiaris (dog) : TFAP2B (transcription factor AP-2 beta)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Tfap2b (transcription factor AP-2 beta)
Sus scrofa (pig) : TFAP2B (transcription factor AP-2 beta)
Chlorocebus sabaeus (African green monkey) : TFAP2B (transcription factor AP-2 beta)
Heterocephalus glaber (naked mole-rat) : Tfap2b (transcription factor AP-2 beta)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0925,410,669 - 25,440,568 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl925,410,669 - 25,440,411 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0924,271,604 - 24,302,855 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4918,052,402 - 18,082,202 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1918,049,775 - 18,079,184 (+)NCBI
Celera919,374,332 - 19,403,772 (+)NCBICelera
Cytogenetic Map9q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Tfap2b
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1306321
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2020-06-09
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.