Gene: Kdm4a (lysine demethylase 4A) Rattus norvegicus
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Symbol: Kdm4a
Name: lysine demethylase 4A
Description: Predicted to have several functions, including histone demethylase activity, methylated histone binding activity, and ubiquitin protein ligase binding activity; involved in several processes, including negative regulation of cell death, positive regulation of gene expression, and regulation of cell development; localizes to the cytoplasm and nucleus; orthologous to human KDM4A (lysine demethylase 4A); PARTICIPATES IN ataxia telangiectasia-mutated (ATM) signaling pathway; histone modification pathway; INTERACTS WITH 1,2-dimethylhydrazine; bisphenol A; copper atom.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: Jmjd2a; jumonji domain containing 2A; LOC313539; lysine (K)-specific demethylase 4A; lysine-specific demethylase 4A
Orthologs:
Homo sapiens (human) : KDM4A (lysine demethylase 4A)  HGNC  Alliance
Mus musculus (house mouse) : Kdm4a (lysine (K)-specific demethylase 4A)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Kdm4a (lysine demethylase 4A)
Pan paniscus (bonobo/pygmy chimpanzee) : KDM4A (lysine demethylase 4A)
Canis lupus familiaris (dog) : KDM4A (lysine demethylase 4A)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Kdm4a (lysine demethylase 4A)
Sus scrofa (pig) : KDM4A (lysine demethylase 4A)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.05136,967,650 - 137,014,402 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.05140,755,996 - 140,802,791 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45138,601,746 - 138,648,523 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.15138,611,767 - 138,673,033 (-)NCBI
Celera5130,220,141 - 130,266,843 (-)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Kdm4a
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1306378
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.