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Gene: Chpf2 (chondroitin polymerizing factor 2) Rattus norvegicus
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Symbol: Chpf2
Name: chondroitin polymerizing factor 2
CRRD ID: 1306404
Description: Predicted to have glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity. Predicted to be involved in chondroitin sulfate biosynthetic process. Predicted to localize to Golgi cisterna membrane and integral component of membrane. Orthologous to human CHPF2 (chondroitin polymerizing factor 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acrylamide; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: chondroitin sulfate glucuronyltransferase; hypothetical protein LOC296733; LOC296733; RGD1306404; similar to mKIAA1402 protein
Orthologs:
Homo sapiens (human) : CHPF2 (chondroitin polymerizing factor 2)  HGNC  Alliance
Mus musculus (house mouse) : Chpf2 (chondroitin polymerizing factor 2)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Chpf2 (chondroitin polymerizing factor 2)
Pan paniscus (bonobo/pygmy chimpanzee) : CHPF2 (chondroitin polymerizing factor 2)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Chpf2 (chondroitin polymerizing factor 2)
Chlorocebus sabaeus (African green monkey) : CHPF2 (chondroitin polymerizing factor 2)
Heterocephalus glaber (naked mole-rat) : Chpf2 (chondroitin polymerizing factor 2)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.047,108,461 - 7,113,940 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl47,108,462 - 7,113,919 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.047,120,974 - 7,126,445 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.445,959,923 - 5,965,385 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.145,960,045 - 5,964,194 (-)NCBI
Celera46,196,444 - 6,201,906 (-)NCBICelera
Cytogenetic Map4q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Chpf2
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1306404
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.