Gene: Clstn1 (calsyntenin 1) Rattus norvegicus
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Symbol: Clstn1
Name: calsyntenin 1
Description: Predicted to have X11-like protein binding activity, amyloid-beta binding activity, and kinesin binding activity; predicted to be involved in several processes, including neurotransmitter receptor transport to postsynaptic membrane, positive regulation of synaptic transmission, and regulation of nervous system development; localizes to several cellular components, including the GABA-ergic synapse, glutamatergic synapse, and integral component of postsynaptic density membrane; orthologous to human CLSTN1 (calsyntenin 1); INTERACTS WITH (S)-10-[(DIMETHYLAMINO)METHYL]-4-ETHYL-4,9-DIHYDROXY-1H-PYRANO[3',4':6,7]INOLIZINO[1,2-B]-QUINOLINE-3,14(4H,12H)-DIONE; bisphenol A; endosulfan.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: alc-alpha; alcadein-alpha; calsyntenin-1; LOC313717
Orthologs:
Homo sapiens (human) : CLSTN1 (calsyntenin 1)  HGNC  Alliance
Mus musculus (house mouse) : Clstn1 (calsyntenin 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Clstn1 (calsyntenin 1)
Pan paniscus (bonobo/pygmy chimpanzee) : CLSTN1 (calsyntenin 1)
Canis lupus familiaris (dog) : LOC479600 (beta-catenin-interacting protein 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Clstn1 (calsyntenin 1)
Sus scrofa (pig) : CLSTN1 (calsyntenin 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.05166,533,262 - 166,601,686 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.05170,179,553 - 170,247,835 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45166,671,098 - 166,734,907 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.15166,681,501 - 166,744,093 (+)NCBI
Celera5158,300,709 - 158,364,026 (+)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
 
More on Clstn1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1306458
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.