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Gene: Atxn2 (ataxin 2) Rattus norvegicus
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Symbol: Atxn2
Name: ataxin 2
Description: Predicted to have RNA binding activity; epidermal growth factor receptor binding activity; and protein C-terminus binding activity. Predicted to be involved in several processes, including cytoplasmic mRNA processing body assembly; negative regulation of growth; and neuron differentiation. Predicted to localize to several cellular components, including cytoplasmic stress granule; polysome; and trans-Golgi network. Human ortholog(s) of this gene implicated in late onset Parkinson's disease and spinocerebellar ataxia type 2. Orthologous to human ATXN2 (ataxin 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene; bisphenol A.
Type: protein-coding
RefSeq Status: MODEL
Also known as: ataxin-2; LOC288663; Sca2; spinocerebellar ataxia 2 (olivopontocerebellar ataxia 2, autosomal dominant, ataxin 2)
Orthologs:
Homo sapiens (human) : ATXN2 (ataxin 2)  HGNC  Alliance
Mus musculus (house mouse) : Atxn2 (ataxin 2)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Atxn2 (ataxin 2)
Pan paniscus (bonobo/pygmy chimpanzee) : ATXN2 (ataxin 2)
Canis lupus familiaris (dog) : ATXN2 (ataxin 2)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Atxn2 (ataxin 2)
Sus scrofa (pig) : ATXN2 (ataxin 2)
Chlorocebus sabaeus (African green monkey) : ATXN2 (ataxin 2)
Heterocephalus glaber (naked mole-rat) : Atxn2 (ataxin 2)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01240,264,601 - 40,335,637 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1240,266,662 - 40,332,612 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01242,137,228 - 42,206,238 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41235,962,308 - 36,009,114 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11235,822,590 - 35,875,779 (-)NCBI
Celera1236,417,282 - 36,487,757 (-)NCBICelera
Cytogenetic Map12q16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Atxn2
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1306637
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2020-03-04
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.