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Gene: Otop3 (otopetrin 3) Rattus norvegicus
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Symbol: Otop3
Name: otopetrin 3
Description: Predicted to have proton channel activity. Predicted to be involved in proton transmembrane transport. Predicted to localize to integral component of membrane. Orthologous to human OTOP3 (otopetrin 3); INTERACTS WITH 2,6-dinitrotoluene; bisphenol A; C60 fullerene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC287821; otopetrin-3
Orthologs:
Homo sapiens (human) : OTOP3 (otopetrin 3)  HGNC  Alliance
Mus musculus (house mouse) : Otop3 (otopetrin 3)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Otop3 (otopetrin 3)
Pan paniscus (bonobo/pygmy chimpanzee) : OTOP3 (otopetrin 3)
Canis lupus familiaris (dog) : OTOP3 (otopetrin 3)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Otop3 (otopetrin 3)
Sus scrofa (pig) : OTOP3 (otopetrin 3)
Chlorocebus sabaeus (African green monkey) : OTOP3 (otopetrin 3)
Heterocephalus glaber (naked mole-rat) : Otop3 (otopetrin 3)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.010103,887,045 - 103,898,331 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10103,891,369 - 103,898,331 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010104,393,465 - 104,404,614 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410105,412,853 - 105,423,998 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.110105,431,699 - 105,438,014 (+)NCBI
Celera1099,152,946 - 99,164,011 (+)NCBICelera
Cytogenetic Map10q32.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Otop3
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1306663
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2020-06-09
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.