Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Jade1 (jade family PHD finger 1) Rattus norvegicus
Analyze
Symbol: Jade1
Name: jade family PHD finger 1
Description: Predicted to have transcription coactivator activity. Predicted to be involved in histone acetylation; negative regulation of G1/S transition of mitotic cell cycle; and negative regulation of canonical Wnt signaling pathway. Predicted to localize to several cellular components, including ciliary basal body; cytosol; and nucleoplasm. Orthologous to human JADE1 (jade family PHD finger 1); INTERACTS WITH (+)-schisandrin B; 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC310352; PHD finger protein 17; Phf17; protein Jade-1
Orthologs:
Homo sapiens (human) : JADE1 (jade family PHD finger 1)  HGNC  Alliance
Mus musculus (house mouse) : Jade1 (jade family PHD finger 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Jade1 (jade family PHD finger 1)
Pan paniscus (bonobo/pygmy chimpanzee) : JADE1 (jade family PHD finger 1)
Canis lupus familiaris (dog) : JADE1 (jade family PHD finger 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Jade1 (jade family PHD finger 1)
Sus scrofa (pig) : JADE1 (jade family PHD finger 1)
Chlorocebus sabaeus (African green monkey) : JADE1 (jade family PHD finger 1)
Heterocephalus glaber (naked mole-rat) : Jade1 (jade family PHD finger 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.02128,461,147 - 128,514,298 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2128,461,224 - 128,514,291 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02148,061,324 - 148,114,469 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42128,499,983 - 128,553,050 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12128,444,210 - 128,502,196 (+)NCBI
Celera2119,445,989 - 119,498,978 (+)NCBICelera
Cytogenetic Map2q25NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Jade1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1306920
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2020-06-23
Status: ACTIVE



NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.