Gene: Cln5 (CLN5, intracellular trafficking protein) Rattus norvegicus
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Symbol: Cln5
Name: CLN5, intracellular trafficking protein
Description: Predicted to have mannose binding activity; predicted to be involved in several processes, including glycosylation, lysosomal lumen acidification, and nervous system development; predicted to localize to the cytoplasm, integral component of membrane, and intracellular organelle; orthologous to human CLN5 (CLN5 intracellular trafficking protein); INTERACTS WITH 2,4-dinitrotoluene; 6-propyl-2-thiouracil; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: ceroid-lipofuscinosis neuronal protein 5; ceroid-lipofuscinosis, neuronal 5; LOC306128
Orthologs:
Homo sapiens (human) : CLN5 (CLN5 intracellular trafficking protein)  HGNC  Alliance
Mus musculus (house mouse) : Cln5 (ceroid-lipofuscinosis, neuronal 5)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Cln5 (CLN5 intracellular trafficking protein)
Pan paniscus (bonobo/pygmy chimpanzee) : CLN5 (CLN5 intracellular trafficking protein)
Canis lupus familiaris (dog) : CLN5 (CLN5 intracellular trafficking protein)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Cln5 (CLN5 intracellular trafficking protein)
Sus scrofa (pig) : CLN5 (CLN5 intracellular trafficking protein)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01593,634,815 - 93,644,146 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01597,122,608 - 97,131,939 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41587,080,071 - 87,089,784 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11587,095,850 - 87,104,041 (+)NCBI
Celera1579,034,732 - 79,043,598 (+)NCBICelera
Cytogenetic Map15q23NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
 
More on Cln5
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1306965
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.