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Gene: Cln5 (CLN5, intracellular trafficking protein) Rattus norvegicus
Symbol: Cln5
Name: CLN5, intracellular trafficking protein
Description: Predicted to have hydrolase activity, acting on glycosyl bonds and mannose binding activity. Predicted to be involved in several processes, including lysosomal lumen acidification; nervous system development; and signal peptide processing. Predicted to localize to several cellular components, including Golgi apparatus; perinuclear region of cytoplasm; and vacuole. Human ortholog(s) of this gene implicated in neuronal ceroid lipofuscinosis 5. Orthologous to human CLN5 (CLN5 intracellular trafficking protein); INTERACTS WITH 2,4-dinitrotoluene; 6-propyl-2-thiouracil; bisphenol A.
Type: protein-coding
Also known as: ceroid-lipofuscinosis neuronal protein 5; ceroid-lipofuscinosis, neuronal 5; LOC306128
Homo sapiens (human) : CLN5 (CLN5 intracellular trafficking protein)  HGNC  Alliance
Mus musculus (house mouse) : Cln5 (ceroid-lipofuscinosis, neuronal 5)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Cln5 (CLN5 intracellular trafficking protein)
Pan paniscus (bonobo/pygmy chimpanzee) : CLN5 (CLN5 intracellular trafficking protein)
Canis lupus familiaris (dog) : CLN5 (CLN5 intracellular trafficking protein)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Cln5 (CLN5 intracellular trafficking protein)
Sus scrofa (pig) : CLN5 (CLN5 intracellular trafficking protein)
Chlorocebus sabaeus (African green monkey) : CLN5 (CLN5 intracellular trafficking protein)
Heterocephalus glaber (naked mole-rat) : Cln5 (CLN5 intracellular trafficking protein)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
NCBI Annotation Information: Annotation category: partial on reference assembly
Rat AssemblyChrPosition (strand)SourceGenome Browsers
Rnor_6.01593,634,815 - 93,644,146 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01597,122,608 - 97,131,939 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41587,080,071 - 87,089,784 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11587,095,850 - 87,104,041 (+)NCBI
Celera1579,034,732 - 79,043,598 (+)NCBICelera
Cytogenetic Map15q23NCBI
JBrowse: View Region in Genome Browser (JBrowse)

Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated


Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status



Nucleotide Sequences
Protein Sequences

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
More on Cln5
Alliance Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1306965
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2020-06-09
Status: ACTIVE


RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.