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Gene: Tmc5 (transmembrane channel-like 5) Rattus norvegicus
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Symbol: Tmc5
Name: transmembrane channel-like 5
Description: Predicted to have mechanosensitive ion channel activity. Predicted to be involved in ion transmembrane transport. Predicted to localize to the integral component of plasma membrane. Orthologous to human TMC5 (transmembrane channel like 5); INTERACTS WITH 17beta-estradiol; bisphenol A; C60 fullerene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC365360; transmembrane channel-like gene family 5; transmembrane channel-like protein 5
Orthologs:
Homo sapiens (human) : TMC5 (transmembrane channel like 5)  HGNC  Alliance
Mus musculus (house mouse) : Tmc5 (transmembrane channel-like gene family 5)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Tmc5 (transmembrane channel like 5)
Pan paniscus (bonobo/pygmy chimpanzee) : TMC5 (transmembrane channel like 5)
Canis lupus familiaris (dog) : TMC5 (transmembrane channel like 5)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Tmc5 (transmembrane channel like 5)
Sus scrofa (pig) : TMC5 (transmembrane channel like 5)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
NCBI Annotation Information: Annotation category: suggests misassembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01188,288,738 - 188,337,310 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1188,278,469 - 188,337,308 (+)Ensembl
Rnor_5.01195,234,862 - 195,283,331 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41176,854,487 - 176,865,156 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11176,993,732 - 177,007,689 (+)NCBI
Celera1170,724,112 - 170,766,605 (+)NCBICelera
Cytogenetic Map1q35NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Tmc5
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1307037
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-11-27
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.