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Gene: Trerf1 (transcriptional regulating factor 1) Rattus norvegicus
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Symbol: Trerf1
Name: transcriptional regulating factor 1
Description: Predicted to have DNA-binding transcription factor activity; transcription factor binding activity; and transcription regulatory region DNA binding activity. Predicted to be involved in positive regulation of transcription, DNA-templated. Predicted to localize to the cytosol; nuclear lumen; and transcription factor complex. Orthologous to human TRERF1 (transcriptional regulating factor 1); INTERACTS WITH 6-propyl-2-thiouracil; amphetamine; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC316219; transcriptional-regulating factor 1
Orthologs:
Homo sapiens (human) : TRERF1 (transcriptional regulating factor 1)  HGNC  Alliance
Mus musculus (house mouse) : Trerf1 (transcriptional regulating factor 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Trerf1 (transcriptional regulating factor 1)
Pan paniscus (bonobo/pygmy chimpanzee) : TRERF1 (transcriptional regulating factor 1)
Canis lupus familiaris (dog) : TRERF1 (transcriptional regulating factor 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Trerf1 (transcriptional regulating factor 1)
Sus scrofa (pig) : TRERF1 (transcriptional regulating factor 1)
Chlorocebus sabaeus (green monkey) : TRERF1 (transcriptional regulating factor 1)
Heterocephalus glaber (naked mole-rat) : Trerf1 (transcriptional regulating factor 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0915,653,230 - 15,881,695 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl915,655,735 - 15,700,312 (-)Ensembl
Rnor_5.0914,574,701 - 14,796,459 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.499,092,501 - 9,136,587 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.199,087,025 - 9,122,687 (-)NCBI
Celera911,384,447 - 11,428,680 (-)NCBICelera
Cytogenetic Map9q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Trerf1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1307167
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-11-27
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.