Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Hoxc10 (homeo box C10) Rattus norvegicus
Symbol: Hoxc10
Name: homeo box C10
Description: Predicted to have DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II regulatory region sequence-specific DNA binding activity. Predicted to be involved in several processes, including negative regulation of cold-induced thermogenesis; regionalization; and spinal cord motor neuron cell fate specification. Predicted to localize to the nuclear body. Orthologous to human HOXC10 (homeobox C10); INTERACTS WITH all-trans-retinoic acid; atrazine; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: homeobox protein Hox-C10; Hox3.5 homeobox; LOC315338; RGD1307250; similar to Homeobox protein Hox-C10 (Hox-3.6)
Homo sapiens (human) : HOXC10 (homeobox C10)  HGNC  Alliance
Mus musculus (house mouse) : Hoxc10 (homeobox C10)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Hoxc10 (homeobox C10)
Pan paniscus (bonobo/pygmy chimpanzee) : HOXC10 (homeobox C10)
Canis lupus familiaris (dog) : HOXC10 (homeobox C10)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Hoxc10 (homeobox C10)
Sus scrofa (pig) : HOXC10 (homeobox C10)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Rat AssemblyChrPosition (strand)SourceGenome Browsers
Rnor_6.07144,577,578 - 144,582,802 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7144,577,465 - 144,582,622 (+)Ensembl
Rnor_5.07142,368,850 - 142,374,159 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47141,717,910 - 141,734,613 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.17141,808,802 - 141,813,297 (+)NCBI
Celera7130,529,927 - 130,535,151 (+)NCBICelera
Cytogenetic Map7q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)

References - curated
References - uncurated


Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status


RNA-SEQ Expression


Nucleotide Sequences
Protein Sequences

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
More on Hoxc10
Alliance Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1307250
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-11-27
Status: ACTIVE


RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.