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Gene: Hoxc10 (homeo box C10) Rattus norvegicus
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Symbol: Hoxc10
Name: homeo box C10
Description: Predicted to have DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II regulatory region sequence-specific DNA binding activity. Predicted to be involved in several processes, including negative regulation of cold-induced thermogenesis; regionalization; and spinal cord motor neuron cell fate specification. Predicted to localize to the nuclear body. Orthologous to human HOXC10 (homeobox C10); INTERACTS WITH all-trans-retinoic acid; atrazine; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: homeobox protein Hox-C10; Hox3.5 homeobox; LOC315338; RGD1307250; similar to Homeobox protein Hox-C10 (Hox-3.6)
Orthologs:
Homo sapiens (human) : HOXC10 (homeobox C10)  HGNC  Alliance
Mus musculus (house mouse) : Hoxc10 (homeobox C10)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Hoxc10 (homeobox C10)
Pan paniscus (bonobo/pygmy chimpanzee) : HOXC10 (homeobox C10)
Canis lupus familiaris (dog) : HOXC10 (homeobox C10)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Hoxc10 (homeobox C10)
Sus scrofa (pig) : HOXC10 (homeobox C10)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.07144,577,578 - 144,582,802 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7144,577,465 - 144,582,622 (+)Ensembl
Rnor_5.07142,368,850 - 142,374,159 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47141,717,910 - 141,734,613 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.17141,808,802 - 141,813,297 (+)NCBI
Celera7130,529,927 - 130,535,151 (+)NCBICelera
Cytogenetic Map7q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Hoxc10
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1307250
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-11-27
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.