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Gene: Smpdl3b (sphingomyelin phosphodiesterase, acid-like 3B) Rattus norvegicus
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Symbol: Smpdl3b
Name: sphingomyelin phosphodiesterase, acid-like 3B
Description: Predicted to have phosphoric diester hydrolase activity and zinc ion binding activity. Predicted to be involved in membrane lipid catabolic process; negative regulation of inflammatory response; and negative regulation of toll-like receptor signaling pathway. Predicted to localize to extracellular space and plasma membrane. Orthologous to human SMPDL3B (sphingomyelin phosphodiesterase acid like 3B); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,4,6-trinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: acid sphingomyelinase-like phosphodiesterase 3b; LOC362619; MGC116117
Orthologs:
Homo sapiens (human) : SMPDL3B (sphingomyelin phosphodiesterase acid like 3B)  HGNC  Alliance
Mus musculus (house mouse) : Smpdl3b (sphingomyelin phosphodiesterase, acid-like 3B)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Smpdl3b (sphingomyelin phosphodiesterase acid like 3B)
Pan paniscus (bonobo/pygmy chimpanzee) : SMPDL3B (sphingomyelin phosphodiesterase acid like 3B)
Canis lupus familiaris (dog) : SMPDL3B (sphingomyelin phosphodiesterase acid like 3B)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Smpdl3b (sphingomyelin phosphodiesterase acid like 3B)
Sus scrofa (pig) : SMPDL3B (sphingomyelin phosphodiesterase acid like 3B)
Chlorocebus sabaeus (African green monkey) : SMPDL3B (sphingomyelin phosphodiesterase acid like 3B)
Heterocephalus glaber (naked mole-rat) : Smpdl3b (sphingomyelin phosphodiesterase acid like 3B)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.05150,925,150 - 150,946,994 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5150,925,370 - 150,949,931 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05154,592,752 - 154,614,208 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45152,390,454 - 152,415,338 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.15152,400,451 - 152,424,958 (+)NCBI
Celera5143,370,153 - 143,390,983 (-)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Smpdl3b
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1307458
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2020-03-04
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.