Gene: Trim13 (tripartite motif-containing 13) Rattus norvegicus
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Symbol: Trim13
Name: tripartite motif-containing 13
Description: Predicted to have ubiquitin-protein transferase activity; predicted to be involved in several processes, including cellular protein metabolic process, innate immune response, and regulation of viral process; predicted to localize to the endoplasmic reticulum membrane and perinuclear endoplasmic reticulum; orthologous to human TRIM13 (tripartite motif containing 13); INTERACTS WITH bisphenol A; furan; ketamine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: E3 ubiquitin-protein ligase TRIM13; LOC364398; putative tumor suppressor RFP2; ret finger protein 2; RING-type E3 ubiquitin transferase TRIM13; tripartite motif protein 13; tripartite motif-containing protein 13
Orthologs:
Homo sapiens (human) : TRIM13 (tripartite motif containing 13)  HGNC  Alliance
Mus musculus (house mouse) : Trim13 (tripartite motif-containing 13)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Trim13 (tripartite motif containing 13)
Pan paniscus (bonobo/pygmy chimpanzee) : TRIM13 (tripartite motif containing 13)
Canis lupus familiaris (dog) : TRIM13 (tripartite motif containing 13)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Trim13 (tripartite motif containing 13)
Sus scrofa (pig) : TRIM13 (tripartite motif containing 13)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01541,897,191 - 41,936,545 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01545,698,405 - 45,736,734 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41540,743,520 - 40,752,138 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11540,759,219 - 40,767,837 (+)NCBI
Celera1535,459,278 - 35,467,759 (+)NCBICelera
Cytogenetic Map15p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
 
More on Trim13
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1307609
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.