Gene: Kdm6b (lysine demethylase 6B) Rattus norvegicus
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Symbol: Kdm6b
Name: lysine demethylase 6B
Description: Exhibits chromatin binding activity; involved in several processes, including hippocampus development, inflammatory response to antigenic stimulus, and response to activity; localizes to the nucleus; orthologous to human KDM6B (lysine demethylase 6B); PARTICIPATES IN histone modification pathway; INTERACTS WITH (S)-10-[(DIMETHYLAMINO)METHYL]-4-ETHYL-4,9-DIHYDROXY-1H-PYRANO[3',4':6,7]INOLIZINO[1,2-B]-QUINOLINE-3,14(4H,12H)-DIONE; 2,2',5,5'-tetrachlorobiphenyl; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: Jmjd3; jumonji domain containing 3; jumonji domain-containing 3; LOC363630; lysine (K)-specific demethylase 6B; lysine-specific demethylase 6B
Orthologs:
Homo sapiens (human) : KDM6B (lysine demethylase 6B)  HGNC  Alliance
Mus musculus (house mouse) : Kdm6b (KDM1 lysine (K)-specific demethylase 6B)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Kdm6b (lysine demethylase 6B)
Pan paniscus (bonobo/pygmy chimpanzee) : KDM6B (lysine demethylase 6B)
Canis lupus familiaris (dog) : KDM6B (lysine demethylase 6B)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Kdm6b (lysine demethylase 6B)
Sus scrofa (pig) : KDM6B (lysine demethylase 6B)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01056,000,494 - 56,009,582 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01055,743,701 - 55,751,368 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41056,194,131 - 56,202,139 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11056,207,737 - 56,221,527 (-)NCBI
Celera1053,278,345 - 53,286,159 (-)NCBICelera
Cytogenetic Map10q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
 
More on Kdm6b
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1307629
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-05-14
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.