 Gene-Chemical Interaction Annotations | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Gene Ontology Annotations |
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Analyze GeneStrainQTL List |
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Gene Ontology AnnotationsDisease Annotations
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Gene-Chemical Interaction Annotations
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Gene Ontology AnnotationsBiological Process
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Cellular Component
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Molecular Function
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References - curated| 1. | Komiya Y, etal., J Biol Chem. 2008 Jul 4;283(27):18753-64. Epub 2008 May 5. |
| 2. | RGD automated import pipeline for gene-chemical interactions |
References - uncuratedGenomics
Comparative Map Data| Akirin2 (Rattus norvegicus - Norway rat) |
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| AKIRIN2 (Homo sapiens - human) |
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| Akirin2 (Mus musculus - house mouse) |
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| Akirin2 (Chinchilla lanigera - long-tailed chinchilla) |
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| AKIRIN2 (Pan paniscus - bonobo/pygmy chimpanzee) |
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| AKIRIN2 (Canis lupus familiaris - dog) |
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| Akirin2 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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| AKIRIN2 (Sus scrofa - pig) |
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Position Markers| RH139650 |
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| UniSTS:234891 |
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QTLs in Region (Rnor_6.0)| The following QTLs overlap with this region. |  | Full Report | | CSV | | TAB | | Printer | | Gviewer |
miRNA Target Status
Predicted Target Of
| The detailed report is available here: | | Full Report | | CSV | | TAB | | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
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Expression
RNA-SEQ ExpressionHigh: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM
| testis | heart | brain | ovary | uterus | skeletal muscle tissue | colon | gastrocnemius | forebrain | hindbrain | lung | spleen | liver | kidney | adrenal gland | thymus | |
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| High | ||||||||||||||||
| Medium | 22 | 43 | 23 | 15 | 4 | 3 | 3 | 8 | 26 | 25 | 11 | 11 | 41 | 35 | 8 | 8 |
| Low | ||||||||||||||||
| Below cutoff |
View RNA-SEQ Expression Data
Sequence
Nucleotide Sequences| RefSeq Transcripts | NM_001039914 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| XM_008763614 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| GenBank Nucleotide | AABR07047841 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| AAHX01035993 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01035994 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AB234867 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| CH473962 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
Reference Sequences
| RefSeq Acc Id: | NM_001039914 ⟹ NP_001035003 | ||||||||||||||||||||||||
| RefSeq Status: | PROVISIONAL | ||||||||||||||||||||||||
| Type: | CODING | ||||||||||||||||||||||||
| Position: |
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| Sequence: |
CTCAGCCCGAGCGCACGGCGGGGGCGGCCCGGCCTCTCGGGAGCGGCCCCGAGCGGGCGGCGCGhide sequence |
| RefSeq Acc Id: | XM_008763614 ⟹ XP_008761836 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
AGGATTTGAATCGGCGGCGTTGTTATTGACGCCATATTGGGGCCGGCGGCGGGTGGCAGAGTTGhide sequence |
Protein Sequences| Protein RefSeqs | NP_001035003 | (Get FASTA) | NCBI Sequence Viewer |
| XP_008761836 | (Get FASTA) | NCBI Sequence Viewer | |
| GenBank Protein | BAE81786 | (Get FASTA) | NCBI Sequence Viewer |
| EDL98593 | (Get FASTA) | NCBI Sequence Viewer | |
| Q25C79 | (Get FASTA) | NCBI Sequence Viewer |
Reference Sequences
| RefSeq Acc Id: | NP_001035003 ⟸ NM_001039914 |
| - UniProtKB: | Q25C79 (UniProtKB/Swiss-Prot) |
| - Sequence: |
MACGATLKRTLDFDPLLSPASPKRRRCAPLSAPASAAASPAAATAAAAASAAAASPQKYLRMEPhide sequence |
| RefSeq Acc Id: | XP_008761836 ⟸ XM_008763614 |
| - Peptide Label: | isoform X1 |
| - Sequence: |
MACGATLKRTLDFDPLLSPASPKRRRCAPLSAPASAAASPAAATAAAAASAAAASPQKYLRMEPhide sequence |
TranscriptomePromoters| RGD ID: | 13693616 | |||||||||
| Promoter ID: | EPDNEW_R4141 | |||||||||
| Type: | initiation region | |||||||||
| Name: | Akirin2_1 | |||||||||
| Description: | akirin 2 | |||||||||
| SO ACC ID: | SO:0000170 | |||||||||
| Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | |||||||||
| Experiment Methods: | Single-end sequencing. | |||||||||
| Position: |
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Strain Variation
Strain Sequence Variants (Rnor 6.0)
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Additional Information
External Database Links| Database | Acc Id | Source(s) |
| AGR Gene | RGD:1307791 | AgrOrtholog |
| Ensembl Genes | ENSRNOG00000008288 | ENTREZGENE, UniProtKB/Swiss-Prot |
| Ensembl Protein | ENSRNOP00000010962 | ENTREZGENE, UniProtKB/Swiss-Prot |
| Ensembl Transcript | ENSRNOT00000010962 | ENTREZGENE, UniProtKB/Swiss-Prot |
| InterPro | Akirin | UniProtKB/Swiss-Prot |
| KEGG Report | rno:297968 | UniProtKB/Swiss-Prot |
| NCBI Gene | 297968 | ENTREZGENE |
| PANTHER | PTHR13293 | UniProtKB/Swiss-Prot |
| PhenoGen | Akirin2 | PhenoGen |
| UniGene | Rn.3858 | ENTREZGENE |
| UniProt | AKIR2_RAT | UniProtKB/Swiss-Prot, ENTREZGENE |
Nomenclature History| Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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| 2008-09-09 | Akirin2 | akirin 2 | RGD1307791 | similar to hypothetical protein FLJ10342 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
| 2008-04-30 | RGD1307791 | similar to hypothetical protein FLJ10342 | RGD1307791_predicted | similar to hypothetical protein FLJ10342 (predicted) | 'predicted' is removed | 2292626 | APPROVED |
| 2005-01-20 | RGD1307791_predicted | similar to hypothetical protein FLJ10342 (predicted) | LOC297968_predicted | Symbol and Name status set to approved | 1331353 | APPROVED | |
| 2005-01-12 | LOC297968_predicted | similar to hypothetical protein FLJ10342 (predicted) | Symbol and Name status set to provisional | 70820 | PROVISIONAL |
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| More on Akirin2 | |
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Alliance Gene |
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NCBI Gene |
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Ensembl Gene |
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JBrowse: rn5 rn6 |
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NCBI Genome Data Viewer |
| CRRD Object Information | |
| CRRD ID: | 1307791 |
| Created: | 2005-01-12 |
| Species: | Rattus norvegicus |
| Last Modified: | 2019-11-27 |
| Status: | ACTIVE |
