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Gene: Apobec3 (apolipoprotein B mRNA editing enzyme catalytic subunit 3) Rattus norvegicus
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Symbol: Apobec3
Name: apolipoprotein B mRNA editing enzyme catalytic subunit 3
CRRD ID: 1307800
Description: Predicted to have RNA binding activity; cytidine deaminase activity; and deoxycytidine deaminase activity. Predicted to be involved in several processes, including DNA modification; cytidine to uridine editing; and negative regulation of single stranded viral RNA replication via double stranded DNA intermediate. Predicted to localize to P-body and nucleoplasm. Orthologous to several human genes including APOBEC3D (apolipoprotein B mRNA editing enzyme catalytic subunit 3D) and APOBEC3F (apolipoprotein B mRNA editing enzyme catalytic subunit 3F); INTERACTS WITH 3-chloropropane-1,2-diol; acetamide; amphetamine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: Apobec3b; Apobec3f; apolipoprotein B editing complex 3; apolipoprotein B mRNA editing enzyme catalytic subunit 3B; apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B; apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3F; DNA dC->dU-editing enzyme APOBEC3; LOC315137; MGC124783; probable DNA dC->dU-editing enzyme APOBEC3
Orthologs:
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.07121,108,108 - 121,128,346 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7121,109,241 - 121,128,542 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07121,099,574 - 121,118,684 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47118,121,580 - 118,140,691 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.17118,145,775 - 118,174,915 (+)NCBI
Celera7107,763,814 - 107,782,772 (+)NCBICelera
Cytogenetic Map7q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Apobec3
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1307800
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.