Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Vps11 (VPS11 core subunit of CORVET and HOPS complexes) Rattus norvegicus
Analyze
Symbol: Vps11
Name: VPS11 core subunit of CORVET and HOPS complexes
CRRD ID: 1308038
Description: Predicted to have protein domain specific binding activity; protein-macromolecule adaptor activity; and syntaxin binding activity. Predicted to be involved in several processes, including positive regulation of early endosome to late endosome transport; regulation of organelle organization; and vesicle organization. Predicted to colocalize with AP-3 adaptor complex. Human ortholog(s) of this gene implicated in hypomyelinating leukodystrophy 12. Orthologous to human VPS11 (VPS11 core subunit of CORVET and HOPS complexes); INTERACTS WITH 2,6-dinitrotoluene; bisphenol A; C60 fullerene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC315600; vacuolar protein sorting 11 (yeast) ; vacuolar protein sorting 11 homolog; vacuolar protein sorting 11 homolog (S. cerevisiae); vacuolar protein sorting-associated protein 11 homolog; VPS11 CORVET/HOPS core subunit
Orthologs:
Homo sapiens (human) : VPS11 (VPS11 core subunit of CORVET and HOPS complexes)  HGNC  Alliance
Mus musculus (house mouse) : Vps11 (VPS11, CORVET/HOPS core subunit)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Vps11 (VPS11 core subunit of CORVET and HOPS complexes)
Pan paniscus (bonobo/pygmy chimpanzee) : VPS11 (VPS11 core subunit of CORVET and HOPS complexes)
Canis lupus familiaris (dog) : VPS11 (VPS11 core subunit of CORVET and HOPS complexes)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Vps11 (VPS11 core subunit of CORVET and HOPS complexes)
Sus scrofa (pig) : VPS11 (VPS11 core subunit of CORVET and HOPS complexes)
Chlorocebus sabaeus (African green monkey) : VPS11 (VPS11 core subunit of CORVET and HOPS complexes)
Heterocephalus glaber (naked mole-rat) : Vps11 (VPS11 core subunit of CORVET and HOPS complexes)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0848,677,492 - 48,692,295 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl848,677,492 - 48,692,295 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0847,296,463 - 47,311,266 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4847,324,449 - 47,339,252 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1847,333,277 - 47,348,018 (-)NCBI
Celera844,270,001 - 44,284,802 (-)NCBICelera
Cytogenetic Map8q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Vps11
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1308038
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE



NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.