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Gene: Shroom1 (shroom family member 1) Rattus norvegicus
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Symbol: Shroom1
Name: shroom family member 1
Description: Predicted to have actin filament binding activity and myosin II binding activity. Predicted to be involved in actin filament bundle assembly and cell morphogenesis. Predicted to localize to several cellular components, including adherens junction; apical junction complex; and apical plasma membrane. Orthologous to human SHROOM1 (shroom family member 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol; bisphenol A.
Type: protein-coding
RefSeq Status: MODEL
Also known as: LOC287285; RGD1308066; similar to KIAA1960 protein
Orthologs:
Homo sapiens (human) : SHROOM1 (shroom family member 1)  HGNC  Alliance
Mus musculus (house mouse) : Shroom1 (shroom family member 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Shroom1 (shroom family member 1)
Pan paniscus (bonobo/pygmy chimpanzee) : SHROOM1 (shroom family member 1)
Canis lupus familiaris (dog) : SHROOM1 (shroom family member 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Shroom1 (shroom family member 1)
Sus scrofa (pig) : SHROOM1 (shroom family member 1)
Chlorocebus sabaeus (African green monkey) : SHROOM1 (shroom family member 1)
Heterocephalus glaber (naked mole-rat) : Shroom1 (shroom family member 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01038,814,420 - 38,825,159 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1038,814,799 - 38,824,673 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01038,596,430 - 38,606,886 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41038,925,114 - 38,935,035 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11038,931,537 - 38,941,280 (+)NCBI
Celera1036,967,654 - 36,978,392 (+)NCBICelera
Cytogenetic Map10q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Shroom1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1308066
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2020-03-04
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.