Gene: Nphp1 (nephrocystin 1) Rattus norvegicus
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Symbol: Nphp1
Name: nephrocystin 1
Description: Predicted to be involved in several processes, including cell projection organization, cellular protein localization, and photoreceptor cell outer segment organization; predicted to localize to the cell-cell junction, cilium, and cytoplasm; orthologous to human NPHP1 (nephrocystin 1); INTERACTS WITH acrylamide; bisphenol A; cobalt dichloride.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: hypothetical protein LOC680233; LOC296136; LOC680233; nephrocystin-1; nephronophthisis 1 (juvenile); nephronophthisis 1 (juvenile) homolog; nephronophthisis 1 (juvenile) homolog (human)
Orthologs:
Homo sapiens (human) : NPHP1 (nephrocystin 1)  HGNC  Alliance
Mus musculus (house mouse) : Nphp1 (nephronophthisis 1 (juvenile) homolog (human))  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Nphp1 (nephrocystin 1)
Pan paniscus (bonobo/pygmy chimpanzee) : NPHP1 (nephrocystin 1)
Canis lupus familiaris (dog) : NPHP1 (nephrocystin 1)
Sus scrofa (pig) : NPHP1 (nephrocystin 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.03120,316,048 - 120,370,089 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.03126,960,471 - 127,017,986 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43115,263,821 - 115,322,901 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.13115,169,392 - 115,225,028 (-)NCBI
Celera3113,795,120 - 113,850,690 (-)NCBICelera
Cytogenetic Map3q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences

Strain Variation

Strain Sequence Variants (Rnor 5.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Nphp1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1308136
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.