Gene: Sema3f (semaphorin 3F) Rattus norvegicus
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Symbol: Sema3f
Name: semaphorin 3F
Description: Predicted to have chemorepellent activity, neuropilin binding activity, and semaphorin receptor binding activity; predicted to be involved in several processes, including animal organ development, negative chemotaxis, and nervous system development; predicted to localize to the extracellular space, glutamatergic synapse, and integral component of plasma membrane; orthologous to human SEMA3F (semaphorin 3F); INTERACTS WITH benzo[a]pyrene; bisphenol A; cocaine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3 F; SemaIV; semaphorin IV; semaphorin-3F
Orthologs:
Homo sapiens (human) : SEMA3F (semaphorin 3F)  HGNC  Alliance
Mus musculus (house mouse) : Sema3f (sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Sema3f (semaphorin 3F)
Pan paniscus (bonobo/pygmy chimpanzee) : SEMA3F (semaphorin 3F)
Canis lupus familiaris (dog) : SEMA3F (semaphorin 3F)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Sema3f (semaphorin 3F)
Sus scrofa (pig) : SEMA3F (semaphorin 3F)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.08116,439,996 - 116,469,915 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.08115,795,106 - 115,824,684 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48112,932,112 - 112,962,333 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.18112,951,566 - 112,982,883 (-)NCBI
Celera8107,663,870 - 107,693,466 (-)NCBICelera
Cytogenetic Map8q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 5.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Sema3f
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1308514
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.