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Gene: Coch (cochlin) Rattus norvegicus
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Symbol: Coch
Name: cochlin
Description: Predicted to have collagen binding activity. Predicted to be involved in several processes, including defense response to bacterium; growth plate cartilage chondrocyte morphogenesis; and sensory perception of sound. Predicted to localize to the collagen-containing extracellular matrix and extracellular space. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness 9. Orthologous to human COCH (cochlin); INTERACTS WITH 2,4-dinitrotoluene; 6-propyl-2-thiouracil; benzo[a]pyrene.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: coagulation factor C homolog (Limulus polyphemus); coagulation factor C homolog, cochlin (Limulus polyphemus); LOC362735
Orthologs:
Homo sapiens (human) : COCH (cochlin)  HGNC  Alliance
Mus musculus (house mouse) : Coch (cochlin)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Coch (cochlin)
Pan paniscus (bonobo/pygmy chimpanzee) : COCH (cochlin)
Canis lupus familiaris (dog) : COCH (cochlin)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Coch (cochlin)
Sus scrofa (pig) : COCH (cochlin)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0672,359,702 - 72,373,710 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0681,924,131 - 81,937,869 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4671,692,946 - 71,697,056 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1671,605,998 - 71,709,462 (+)NCBI
Celera667,908,175 - 67,912,285 (+)NCBICelera
Cytogenetic Map6q23NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Coch
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1308536
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-09-10
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.