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Gene: Lca5 (lebercilin LCA5) Rattus norvegicus
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Symbol: Lca5
Name: lebercilin LCA5
Description: Predicted to be involved in intraciliary transport and photoreceptor cell maintenance. Localizes to the ciliary basal body and photoreceptor connecting cilium. Human ortholog(s) of this gene implicated in Leber congenital amaurosis 5. Orthologous to human LCA5 (lebercilin LCA5); INTERACTS WITH 1-naphthyl isothiocyanate; endosulfan; 2,2',4,4',5,5'-hexachlorobiphenyl (ortholog).
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LCA5, lebercilin; Leber congenital amaurosis 5; Leber congenital amaurosis 5 (human); leber congenital amaurosis 5 protein homolog; Lebercilin; LOC300866; RGD1308555; similar to RIKEN cDNA 4930431B11 gene
Orthologs:
Homo sapiens (human) : LCA5 (lebercilin LCA5)  HGNC  Alliance
Mus musculus (house mouse) : Lca5 (Leber congenital amaurosis 5 (human))  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Lca5 (lebercilin LCA5)
Pan paniscus (bonobo/pygmy chimpanzee) : LCA5 (lebercilin LCA5)
Canis lupus familiaris (dog) : LCA5 (lebercilin LCA5)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Lca5 (lebercilin LCA5)
Sus scrofa (pig) : LCA5 (lebercilin LCA5)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0890,926,309 - 90,984,271 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0890,435,348 - 90,503,675 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4888,464,748 - 88,522,568 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1888,484,204 - 88,542,023 (-)NCBI
Celera883,973,822 - 84,031,009 (-)NCBICelera
Cytogenetic Map8q31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Lca5
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1308555
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.