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Gene: Lrrc47 (leucine rich repeat containing 47) Rattus norvegicus
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Symbol: Lrrc47
Name: leucine rich repeat containing 47
Description: Predicted to contribute to phenylalanine-tRNA ligase activity. Orthologous to human LRRC47 (leucine rich repeat containing 47); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,4,7,8-Pentachlorodibenzofuran; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: leucine-rich repeat-containing protein 47; LOC362672; RGD1308599; similar to KIAA1185 protein
Orthologs:
Homo sapiens (human) : LRRC47 (leucine rich repeat containing 47)  HGNC  Alliance
Mus musculus (house mouse) : Lrrc47 (leucine rich repeat containing 47)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Lrrc47 (leucine rich repeat containing 47)
Pan paniscus (bonobo/pygmy chimpanzee) : LRRC47 (leucine rich repeat containing 47)
Canis lupus familiaris (dog) : LRRC47 (leucine rich repeat containing 47)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Lrrc47 (leucine rich repeat containing 47)
Sus scrofa (pig) : LRRC47 (leucine rich repeat containing 47)
Chlorocebus sabaeus (green monkey) : LRRC47 (leucine rich repeat containing 47)
Heterocephalus glaber (naked mole-rat) : Lrrc47 (leucine rich repeat containing 47)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.05171,297,850 - 171,307,682 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5171,297,850 - 171,307,682 (+)Ensembl
Rnor_5.05174,789,385 - 174,799,217 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45170,798,638 - 170,808,075 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.15170,809,132 - 170,817,648 (+)NCBI
Celera5162,782,523 - 162,792,158 (+)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Lrrc47
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1308599
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-11-27
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.