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Gene: Lsm5 (LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated) Rattus norvegicus
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Symbol: Lsm5
Name: LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated
Description: Predicted to contribute to RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome and response to bacterium. Predicted to localize to the Lsm1-7-Pat1 complex; Lsm2-8 complex; and nucleus. Orthologous to human LSM5 (LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated); PARTICIPATES IN RNA degradation pathway; spliceosome pathway; INTERACTS WITH (S)-10-[(DIMETHYLAMINO)METHYL]-4-ETHYL-4,9-DIHYDROXY-1H-PYRANO[3',4':6,7]INOLIZINO[1,2-B]-QUINOLINE-3,14(4H,12H)-DIONE; acrylamide; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC306222; LSM5 homolog, U6 small nuclear RNA associated; LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae); LSM5 U6 small nuclear RNA and mRNA degradation associated; U6 snRNA-associated Sm-like protein LSm5
Orthologs:
Related Pseudogenes: LOC103692678  
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0487,016,003 - 87,019,219 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.04151,668,265 - 151,671,481 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4485,656,850 - 85,660,066NCBIRGSC3.4rn4RGSC3.4
Celera480,789,492 - 80,792,716 (-)NCBICelera
Cytogenetic Map4q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
 
More on Lsm5
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1308655
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.