Gene: Tmc1 (transmembrane channel-like 1) Rattus norvegicus
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Symbol: Tmc1
Name: transmembrane channel-like 1
Description: Predicted to have mechanosensitive ion channel activity and voltage-gated calcium channel activity; predicted to be involved in several processes, including auditory receptor cell development, calcium ion transmembrane transport, and detection of mechanical stimulus involved in sensory perception of sound; predicted to localize to the external side of plasma membrane and stereocilium tip; orthologous to human TMC1 (transmembrane channel like 1); INTERACTS WITH bisphenol A; furan; aflatoxin B1 (ortholog).
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC361739; transmembrane channel-like gene family 1; transmembrane channel-like protein 1
Orthologs:
Homo sapiens (human) : TMC1 (transmembrane channel like 1)  HGNC  Alliance
Mus musculus (house mouse) : Tmc1 (transmembrane channel-like gene family 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Tmc1 (transmembrane channel like 1)
Pan paniscus (bonobo/pygmy chimpanzee) : TMC1 (transmembrane channel like 1)
Canis lupus familiaris (dog) : TMC1 (transmembrane channel like 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Tmc1 (transmembrane channel like 1)
Sus scrofa (pig) : TMC1 (transmembrane channel like 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01238,336,919 - 238,525,792 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01245,633,195 - 245,678,137 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01245,706,178 - 245,816,628 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41223,911,499 - 224,108,034 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11224,075,517 - 224,193,990 (-)NCBI
Celera1215,544,754 - 215,710,467 (-)NCBICelera
Cytogenetic Map1q51NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References - curated
References - uncurated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
 
More on Tmc1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1308682
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.