Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Col6a3 (collagen type VI alpha 3 chain) Rattus norvegicus
Symbol: Col6a3
Name: collagen type VI alpha 3 chain
Description: Involved in response to glucose. Predicted to localize to several cellular components, including collagen trimer; extracellular space; and sarcolemma. Human ortholog(s) of this gene implicated in Ullrich congenital muscular dystrophy; dystonia 27; and muscular dystrophy. Orthologous to human COL6A3 (collagen type VI alpha 3 chain); PARTICIPATES IN syndecan signaling pathway; cell-extracellular matrix signaling pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 2,2,2-tetramine; 4,4'-diaminodiphenylmethane.
Type: protein-coding
RefSeq Status: MODEL
Also known as: collagen alpha-3(VI) chain; collagen, type VI, alpha 3; LOC367313; procollagen, type VI, alpha 3
Homo sapiens (human) : COL6A3 (collagen type VI alpha 3 chain)  HGNC  Alliance
Mus musculus (house mouse) : Col6a3 (collagen, type VI, alpha 3)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Col6a3 (collagen type VI alpha 3 chain)
Pan paniscus (bonobo/pygmy chimpanzee) : COL6A3 (collagen type VI alpha 3 chain)
Canis lupus familiaris (dog) : COL6A3 (collagen type VI alpha 3 chain)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Col6a3 (collagen type VI alpha 3 chain)
Sus scrofa (pig) : COL6A3 (collagen type VI alpha 3 chain)
Chlorocebus sabaeus (African green monkey) : COL6A3 (collagen type VI alpha 3 chain)
Heterocephalus glaber (naked mole-rat) : Col6a3 (collagen type VI alpha 3 chain)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Rat AssemblyChrPosition (strand)SourceGenome Browsers
Rnor_6.0997,926,784 - 98,004,643 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl997,926,787 - 98,004,546 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0997,607,496 - 97,685,349 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4989,990,129 - 90,043,697 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1990,169,794 - 90,232,286 (-)NCBI
Celera988,906,089 - 88,983,949 (-)NCBICelera
Cytogenetic Map9q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)

Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated


Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status


RNA-SEQ Expression


Nucleotide Sequences
Protein Sequences

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
More on Col6a3
Alliance Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1308704
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2020-06-09
Status: ACTIVE


RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.