Gene: Col6a3 (collagen type VI alpha 3 chain) Rattus norvegicus
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Symbol: Col6a3
Name: collagen type VI alpha 3 chain
Description: Involved in response to glucose; predicted to localize to several cellular components, including the collagen trimer, extracellular matrix, and extracellular space; orthologous to human COL6A3 (collagen type VI alpha 3 chain); PARTICIPATES IN syndecan signaling pathway; cell-extracellular matrix signaling pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 2,2,2-tetramine; 4,4'-diaminodiphenylmethane.
Type: protein-coding
RefSeq Status: MODEL
Also known as: collagen alpha-3(VI) chain; collagen, type VI, alpha 3; LOC367313; procollagen, type VI, alpha 3
Orthologs:
Homo sapiens (human) : COL6A3 (collagen type VI alpha 3 chain)  HGNC  Alliance
Mus musculus (house mouse) : Col6a3 (collagen, type VI, alpha 3)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Col6a3 (collagen type VI alpha 3 chain)
Pan paniscus (bonobo/pygmy chimpanzee) : COL6A3 (collagen type VI alpha 3 chain)
Canis lupus familiaris (dog) : COL6A3 (collagen type VI alpha 3 chain)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Col6a3 (collagen type VI alpha 3 chain)
Sus scrofa (pig) : COL6A3 (collagen type VI alpha 3 chain)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0997,926,784 - 98,004,643 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0997,607,496 - 97,685,349 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4989,990,129 - 90,043,697 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1990,169,794 - 90,232,286 (-)NCBI
Celera988,906,089 - 88,983,949 (-)NCBICelera
Cytogenetic Map9q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences

Strain Variation

Strain Sequence Variants (Rnor 5.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Col6a3
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1308704
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.